BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909112
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) s... 2089 0.0
> AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135667 FORWARD LENGTH=1648
Length=1648
Score = 2089 bits (1131), Expect = 0.0
Identities = 1286/1362 (94%), Gaps = 6/1362 (0%)
Strand=Plus/Plus
Query 1 ATGAAACGTCTTTTAAGCAAATCGCTATGTACATCGGCCGCCGGAGCCAATCTAAAACCA 60
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGAAACGTCTTTTTAGCAAATCGCTATGTACTTCGGCCGCCGGAGCCAATCTCAAACCA 60
Query 61 CCGCCGGCAGATCCCGCCGCCATAGCTAAGCTCATCCTCTCTT-TTC--AC-CAA-AC-C 114
|||||||||||| ||||||||||||||||||| |||||||||| | | || ||| | |
Sbjct 61 CCGCCGGCAGATTCCGCCGCCATAGCTAAGCTTATCCTCTCTTCTCCGAACACAACTCAC 120
Query 115 CTAGACGATCAATTTATTCTCTCCACCAAAACAACCCCATGGACCCCAAATCTCGTCAAC 174
| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CAAGACGATCAATTTCTACTCTCCACCAAAACAACCCCATGGACCCCAAATCTCGTGAAC 180
Query 175 TCTGTTCTCAAGCGCCTCTGGAATCACGGTCCAAAAGCCCTCCAATTCTTCCACTTCCTC 234
|||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 181 TCTGTTCTCAAGCGACTCTGGAACCACGGCCCTAAAGCTCTCCAATTCTTCCACTTCCTC 240
Query 235 GACAATCACCACCGCGAATATGTCCACGACGCTTCCTCCTTCGACCTCGCAATCGACATT 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GACAATCACCACCGCGAATATGTCCACGACGCTTCCTCCTTCGATCTCGCAATCGACATT 300
Query 295 GCCGCCCGTCTTCACATCCACCCCACCGTCTGGTCCCTCATTCACCGTATGCGCTCTCTC 354
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GCCGCCCGTCTTCACCTCCACCCCACCGTCTGGTCACTCATTCACCGTATGCGCTCTCTC 360
Query 355 CGCATCGGTCCTTCTCCCAAGACCTTCGCAATCGTCGCCGAGAGGTACGCTTCCTCCGGG 414
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||
Sbjct 361 CGCATCGGTCCTTCTCCCAAAACCTTCGCAATCGTCGCCGAGAGGTACGCATCCGCTGGG 420
Query 415 AAACCCGATAAAGCGGTAAAGCTGTTTCTGAATATGCACGAACATGGTTGTTTTCAGGAT 474
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AAGCCCGATAAAGCGGTTAAGCTGTTTCTGAATATGCACGAACATGGTTGTTTTCAAGAT 480
Query 475 TTGGCTTCTTTCAATACGATTCTCGATGTGTTGTGTAAATCTAAACGCGTTGAGAAAGCT 534
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 TTAGCTTCTTTCAATACGATTCTCGATGTGTTGTGTAAATCTAAACGCGTAGAGAAAGCT 540
Query 535 TATGAGTTGTTTAGGGCTCTTAGGGGGAGATTTAGTGTTGATACAGTTACTTACAATGTG 594
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TATGAGTTGTTTAGAGCTCTTAGGGGAAGATTTAGTGTTGATACAGTTACTTACAATGTG 600
Query 595 ATTGTTAATGGTTGGTGTTTGATCAAACGGACGCCTAAGGCTTTGGAGGTTTTGAAAGAG 654
||| |||| |||||||||||||| ||| |||||||||||||||| || ||||||||||||
Sbjct 601 ATTCTTAACGGTTGGTGTTTGATTAAAAGGACGCCTAAGGCTTTAGAAGTTTTGAAAGAG 660
Query 655 ATGGTTGATAGAGGGATAAACCCTAATTTGACTACTTATAACACAATGCTCCAAGGTTTT 714
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 ATGGTTGAGAGAGGGATAAACCCTAATTTGACTACTTATAACACAATGCTCAAAGGTTTT 720
Query 715 TTCAGAGCTGGGCAGATTAGACAGGCTTGGGAATTCTTCTTGGAGATGAAGAAGCGGGAT 774
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 721 TTCAGAGCTGGGCAGATTAGACATGCTTGGGAATTCTTCTTGGAGATGAAGAAACGGGAT 780
Query 775 TGTGAAATCGATGTTGTTACTTATACTACTGTGGTTCACGGGTTTGGTGTTGCGGGGGAG 834
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTGAAATAGATGTTGTCACTTATACTACTGTGGTTCACGGGTTTGGTGTTGCGGGGGAG 840
Query 835 ATAAAGCGGGCGAGGAATGTTTTCGATGAGATGATTAGAGAAGGTGTGCTTCCTTCTGTT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAAAGCGGGCGAGGAATGTTTTCGATGAGATGATTAGAGAAGGTGTGCTTCCTTCTGTT 900
Query 895 GCGACATACAATGCTTTCATTCAAGTTTTGTGTAAGAAAGATAGCGTAGAAAATGCGGTT 954
||||| ||||||||| | ||||||||||||||||||||||||| || || |||||||||
Sbjct 901 GCGACGTACAATGCTATGATTCAAGTTTTGTGTAAGAAAGATAATGTGGAGAATGCGGTT 960
Query 955 GTCATGTTTGAGGAAATGGTGAGGAAAGGTTATGAGCCGAATGTGACGACTTATAATGTG 1014
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 GTGATGTTTGAGGAAATGGTGAGGAGAGGTTATGAGCCGAATGTGACGACTTATAATGTG 1020
Query 1015 TTGATCAGAGGGTTATTTCACGCTGGAAAGTTCAGTCGCGGAGAGGAGTTGATGCAGAGA 1074
||||| |||||||| |||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1021 TTGATAAGAGGGTTGTTTCACGCTGGAGAGTTTAGTCGTGGAGAGGAGTTGATGCAGAGA 1080
Query 1075 ATGGAAAATGAAGGCTGTGAACCAAACTTCCAGACGTACAATATGATGATACGCTATTAT 1134
||||| ||||||||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct 1081 ATGGAGAATGAAGGCTGTGAACCAAACTTCCAGACATATAACATGATGATCCGTTATTAT 1140
Query 1135 TCGGAATGCAGCGAGGTTGAGAAAGCATTGGGTTTGTTTAAGAAGATGGGGACTGGTGAT 1194
||||||||||||||||| |||||||| |||||||||||| |||| ||||||| |||||||
Sbjct 1141 TCGGAATGCAGCGAGGTCGAGAAAGCGTTGGGTTTGTTTGAGAAAATGGGGAGTGGTGAT 1200
Query 1195 TGCTTGCCAAATCTAGATACTTACAACATACTGATTAGTGGAATGTTTGTGAGAAAAAGA 1254
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1201 TGCTTGCCAAATCTAGATACTTACAACATACTGATAAGTGGAATGTTTGTGAGAAAAAGA 1260
Query 1255 TCAGAAGATATGGTGGTCGCTGGGAATCAAGCTTTCGCAAAGGAGATCTTGAGATTGCAG 1314
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 TCAGAAGATATGGTGGTCGCTGGGAATCAAGCTTTTGCAAAGGAGATCTTGAGATTGCAG 1320
Query 1315 AGTAAATCTGGTAGCAGGCTTCTCCGGAAGTTCAGGCTATGA 1356
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 AGTAAATCTGGTAGCCGGCTTCTCCGGAAGTTCAGGCTATGA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5