BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909166
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75430.1 | Symbols: BLH11 | BEL1-like homeodomain 11 | chr1:... 1454 0.0
> AT1G75430.1 | Symbols: BLH11 | BEL1-like homeodomain 11 | chr1:28308121-28309610
REVERSE LENGTH=966
Length=966
Score = 1454 bits (787), Expect = 0.0
Identities = 845/873 (97%), Gaps = 4/873 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGTTTAGGGTAAGACATGAGTGTTCATCTCTCCGTGGTACTTTGTTGGATTCA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 ATGGAGGATTTTAGGGTAAGACATGAGTGTTCATCTCTCCGTGGTACTTTGTTGGATTCA 153
Query 61 AGATATGCAAAGGCAGTGCAATGCCTTGTAGAAGAAGTTATTGATATAGGTGGTAGAGAG 120
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 154 AGATATGCTAAGGCAGTGCAATGCCTTGTAGAAGAAGTTATCGATATAGGTGGTAGAGAG 213
Query 121 GTTGAGCTTTGCAACAACATTCTAATCCAA-CAGCTGTTTCCAGGAAGAAGAAGACCCGG 179
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 214 GTTGAGCTTTGCAACAACATTCTAAT-CAATCAGCTGTTTCCAGGAAGGAGAAGACCCGG 272
Query 180 CTTTGGC-TTGTCTTCCGAAATCAAATCCGAATTTTGCAGTTCTGGTTTCATGTCTTTGC 238
||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 273 -TTTTGCTTTGTCTTCCGAAATCAAATCCGAACTTTGCAGTTCTGGTTTCATGTCTTTGC 331
Query 239 CTGAGAATCATGAGATTCATATCAAAATCACCAAGCTTCTCAGTTTGCTGCAACAGGTAG 298
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 332 CTGAGAATCATGAGATTCATATCAAAATCACAAAGCTTCTCAGTTTGTTGCAACAGGTAG 391
Query 299 AAGAAAGATTTGACCTGTACTGCAATCAATTGGAGCAAGTGATTTCATCATTTGAGGAAA 358
||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 392 AAGAAAGATTTGAGCAGTACTGCAATCAACTGGAGCAAGTGATTTCATCATTTGAGGAAA 451
Query 359 TAGCAGGAGAAGGATCATCTAAAGTATACACCGGTTTAGCTCTCCAAGCCATGACTCGAC 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 452 TAGCAGGAGAAGGATCATCTAAAGTGTACACCGGTTTAGCTCTCCAAGCCATGACTCGAC 511
Query 419 ATTTCGGTAGTCTTGAAGAAGCAATAATCTCTCAGCTCAACTCTGTTCGTCGGAGTTTCA 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 512 ATTTCGGTAGTCTTGAAGAAGCAATAATCTCTCAGCTAAACTCTGTTCGTCGGAGATTCA 571
Query 479 TCATTTCTCATCAAGATGTTCCTAAGATCATCAGCTCTGGCTTATCACAGCTCAGCTTGT 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 572 TCATTTCTCATCAAGATGTTCCCAAGATCATCAGCTCTGGCTTATCACAGCTCAGCTTGT 631
Query 539 TCGATGGGAACAACACTTCATCATCCCTTCAGCGACTTGGTTTGGTTCAAGGACCACAGA 598
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 632 TCGATGGGAACACCACTTCATCATCACTTCAGCGACTTGGTTTGGTTCAAGGACCACAGA 691
Query 599 GACATGCTTGGAAACCCATCAGAGGCTTGCCTGAGACTTCCGTTGCAATTCTCCGAGCTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GACATGCTTGGAAACCCATCAGAGGCTTGCCTGAGACTTCCGTTGCAATTCTCCGAGCTT 751
Query 659 GGCTCTTTCAGCATTTTTTACACCCTTATCCGAATGAAGCAGAGAAGCTGGTGTTGGCGT 718
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GGCTCTTTCAACATTTCTTGCACCCTTATCCGAATGAAGCAGAGAAGCTGGTGTTGGCGT 811
Query 719 CTCAAACAGGACTTTCCAAGAACCAAGTATCAAATTGGTTTATAAATGCTCGGGTTCGAC 778
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 812 CTCAAACAGGACTTTCGAAGAACCAAGTATCAAATTGGTTTATAAATGCTCGAGTTCGAC 871
Query 779 TCTGGAAACCGATGATAGAAGAGATGTATAGAGACGAATTTGGAGATTCCTCAGATGAAT 838
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 872 TCTGGAAACCGATGATAGAAGAGATGTATAGAGAGGAATTTGGAGATTCCTTAGATGAAT 931
Query 839 CAATGCAAAGAGAAGCCAATGATGATTCAAACT 871
|||||||||||||||||||||||||||||||||
Sbjct 932 CAATGCAAAGAGAAGCCAATGATGATTCAAACT 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5