BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909175
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75510.1 | Symbols: | Transcription initiation factor IIF, ... 1079 0.0
> AT1G75510.1 | Symbols: | Transcription initiation factor IIF,
beta subunit | chr1:28347055-28348735 REVERSE LENGTH=1091
Length=1091
Score = 1079 bits (584), Expect = 0.0
Identities = 722/788 (92%), Gaps = 11/788 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGACAGTCATGAA-CTCGATATGGAGAAAACTGATAGA-CGGATTTGGTTGATGA 58
|||||||| | |||| || |||||||| ||||||| ||||||| | ||||||||||||||
Sbjct 107 ATGGAAGATATTCAT-AATCTCGATATAGAGAAAAGTGATAGATC-GATTTGGTTGATGA 164
Query 59 AGTGTCCTGTAGTTGTAGCCAAGACATGG---GAGA-AGCTAGCTCCTTCGTCTTCTTCT 114
|||||||||||||||||| |||| ||||| ||| ||| |||| | ||||||||||||
Sbjct 165 AGTGTCCTGTAGTTGTAGACAAGGCATGGCACAAGATAGC-AGCTTCGTCGTCTTCTTCT 223
Query 115 TTTTCTTCCTCTGATCCTCTTCCAAACTTGGCAAAGGTTGTTCTCGACGTTGATCCTTTA 174
||| ||||||| ||| ||| ||| || |||||||| |||||| ||| ||||||||| ||
Sbjct 224 TTTGCTTCCTCGGATTCTCCTCCCGACATGGCAAAGATTGTTCGCGAAGTTGATCCTCTA 283
Query 175 CGGCCCGATTATTCGCCTGAGTTTACTATGCAAATGGTTGCTGCTGAGTATGGGAACATG 234
||| ||||| | | || ||||| | ||| | ||||||| |||||||||||||||||||
Sbjct 284 CGGGACGATTCTCCCCCCGAGTTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATG 343
Query 235 CCAAAGTGCTACGCTTTGAACATGTTCAAAGACTTTGTTCCGATGGAGGCCTTCTCCGAA 294
|||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||
Sbjct 344 CCAAAGTGCTACGCTTTGAACATGTTCACAGACTTTGTTCCGATGGGGGGCTTTTCCGAT 403
Query 295 ACCAATCTAGTTTATCCAGCTGTTGAAGGAAATGTTGATCACAAATTCGATATGAAGCCA 354
|||| || || | |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 404 GTTAATCAAGGTTGTGCAGCTGCTGAAGGAAAGGTTGATCACAAATTCGATATGAAGCCA 463
Query 355 CATGGCGAGAA-CATTGAAGAATATGCTAGGCTTTGTCGTGAGAGAACGAGCAAAGCCAT 413
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TATGGTGA-AACCATTGAAGAATATGCTAGGCTTTGTCGTGAGAGAACGAGCAAAGCCAT 522
Query 414 GGTTAAAAATCGACAGATTCAGGTTATTGATAATGACCGTGGAGTACATATGAGGCCCAT 473
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 523 GGTTAAAAATCGACAGATTCAGGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCAT 582
Query 474 GCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGGAAAAGAGGAAACCTCCCCCAGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGGAAAAGAGGAAACCTCCCCCAGT 642
Query 534 CAAGCAAACCGAGGTGAAGAGGACGAGGAGAGATCGTGGTGAGCTTGAAGCTATAATGTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CAAGCAAACCGAGGTGAAGAGGACGAGGAGAGATCGTGGTGAGCTTGAAGCTATAATGTT 702
Query 594 CAAGCTATTCGAAGGCCAACCTAACTGGACATTGAAGCAGCTTGTACAAGAGACGGACCA 653
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CAAGCTATTTGAAGGCCAGCCTAACTGGACATTGAAGCAGCTTGTACAAGAGACGGACCA 762
Query 654 GCCAGCTCAGTTCCTGAAAGAAATACTAAACGAGCTCTGCGTGTACAATAAGAGAGGATC 713
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 763 GCCAGCTCAGTTCCTGAAAGAAATACTAAACGAGCTGTGCGTGTACAATAAGAGAGGATC 822
Query 714 AAACCAAGGGACATATGAGCTTAAACCTGAATACAAGAAATCTGCTGAAGATGATGCAGG 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 823 GAACCAAGGGACATATGAGCTTAAACCTGAATACAAGAAATCTGCTGAAGATGATACAGG 882
Query 774 TGGGCAGT 781
||||||||
Sbjct 883 TGGGCAGT 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5