BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909198
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75770.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 904 0.0
> AT1G75770.1 | Symbols: | unknown protein; Has 6 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:28449990-28451108 FORWARD LENGTH=862
Length=862
Score = 904 bits (489), Expect = 0.0
Identities = 607/661 (92%), Gaps = 19/661 (3%)
Strand=Plus/Plus
Query 59 ACCGTGACGGCAAAGGCAAGAAGAAAGATGATTTTTTCGATAGAATTGACTACGAAATTT 118
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 76 ACCGTGACGGCAAAGGCAAGAAGAGAGATGATTTTTTCGATAGCATTGACTACGAAATTT 135
Query 119 CTTCAATCTTATTGCAACTTTCACATCCGGTCATATTCTCTTCTGATTCTCCTTTGTTCC 178
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 136 CTTCTATCTTATTGCAACTTTCACATCCTGTCATATTCTCTTCTGATTCTCCTGTGTTAC 195
Query 179 ATAAATGGGGTCGCACTAAAAAGAGGTCCTCTTTTTCAAT-TCACCTGCATCCGCCGGAA 237
|||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||
Sbjct 196 ATAAATGGGGTCGCACTAAAAAGAGGTCTTCTTCTTC-TTCTCACCTGCATCCGCCGGAA 254
Query 238 CCGGTGATGAAATCGCTGCCGTGTACGGCGGAGT-TCGGCGATATGGGAAGTAATTCGAG 296
|||||||| |||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct 255 CCGGTGATAAAATCGCTGCCGTGTATGGCTGA-TGTCGGCGATATGGGAAGTAATTCGAG 313
Query 297 TTCGTCGTGCTTAACCGGTGAGGCCAA-AAAAGCCAATTCTCAAATCATTAAAAAGGGTT 355
||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 314 TTCTTCGTGCTTAACCGGTGAGGCCAAGAAAA-CCAATTCTCAAATCATTAAAAAGGGTT 372
Query 356 TAGAAGAAGAATTTTGTACTAAATATCAGAGTTCTTCAGTCCTCGAGATACAGGCGGATA 415
|||||||||||||||||| ||| ||||||||||||||||||||||| | |||| |
Sbjct 373 TAGAAGAAGAATTTTGTAGGAAAAATCAGAGTTCTTCAGTCCTCGAG-----G-CGGAGA 426
Query 416 CAGGTTTACTTAGAGCA-CAAGTTGGTTTTATAGCCCAGCCCATTAGATGTGATCAACAT 474
||||||||||||| | | |||| |||||| |||||||||||||| |||| ||||||||
Sbjct 427 CAGGTTTACTTAGGG-AGCAAGCTGGTTTAATAGCCCAGCCCATAAGATACGATCAACAA 485
Query 475 CTACCGTTTATTGCGGTTGATCGTACGGTCAAGGTAAGGGAT-TTCGAAACGGCGTCGTT 533
||||||||| |||||||||||||||||||||| || |||||| || ||||||||||||||
Sbjct 486 CTACCGTTTTTTGCGGTTGATCGTACGGTCAATGTGAGGGATGTT-GAAACGGCGTCGTT 544
Query 534 GCGTATGGATAACTTGGAACGACGTGGCTTTGATCTGAACCTTC--C-AGCAGCAGAGGA 590
||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 545 GCGAATGGATAACTTGGAACGACGTGGCTTTGATCTGAACCTTCTTCCAGCAGCAGAGGA 604
Query 591 GGGTTTTCAGAGTGTGGCGAATAAAGTCCAAGTAGCTGCTCAAGCAAGACAAAGAAGACT 650
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GGGTTTTCAGAGAGTGCCAAATAAAGTCCAAGTAGCTGCTCAAGCAAGACAAAGAAGACT 664
Query 651 AGGTTTGATTCGATCCAAGAAGCTTTATAATGGATTCATCTCTTCTTATCAACTTAAGTA 710
||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 665 AGGTTTGATTCGATCTAAGAAGCTTTTTAATAGATTCATCTCTTCTTATCAATTTAAGTA 724
Query 711 G 711
|
Sbjct 725 G 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5