BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909243

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32180.1 | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 |...   224    3e-58
  AT1G65430.1 | Symbols: ARI8, ATARI8 | IBR domain-containing pro...   217    6e-56


> AT4G32180.1 | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 
| chr4:15537559-15543779 REVERSE LENGTH=2935
Length=2935

 Score =  224 bits (121),  Expect = 3e-58
 Identities = 138/146 (95%), Gaps = 1/146 (1%)
 Strand=Plus/Plus

Query  143  AGGCTATTCGATGTGAAGCCTTCACGCACATGGAGGGTGAGATAGAATTTGTACAGATAG  202
            |||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct  705  AGGCTATTCGACATGAAGCCTTTACGCACATGGAGGGTGAGAAAGAATTTGTACAGATAG  764

Query  203  ATCCAAATGACTTGTATCCCTATCTTCTTGTGAACGTTGGATCTGGTGTTAGCATTATCA  262
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  765  ATCCCAATGACTTGTATCCTTATCTTCTTGTGAACGTTGGATCTGGTGTTAGCATAATCA  824

Query  263  AGGTTGATGGTGAAAGGAAAGTTTGA  288
            |||||||||||||| |||||||||||
Sbjct  825  AGGTTGATGGTGAA-GGAAAGTTTGA  849


> AT1G65430.1 | Symbols: ARI8, ATARI8 | IBR domain-containing protein 
| chr1:24300898-24306236 REVERSE LENGTH=2048
Length=2048

 Score =  217 bits (117),  Expect = 6e-56
 Identities = 135/144 (94%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACTACTCCGATTACGCTGACTCC  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  78   ATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACTACTCCGATTACGCCGACTCC  137

Query  61   GACGAATATGATGCCGACGACGATTACGAGTTCGTTGAAGACGCCGCTGATGATTCCGAT  120
            |||||| |||| ||||||| ||| |||||||||||||| ||||| |||||||||||||||
Sbjct  138  GACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACGACGCTGCTGATGATTCCGAT  197

Query  121  GACCTTATCTTCCGCCGCCGCCAG  144
            |||||||||||||| |||||||||
Sbjct  198  GACCTTATCTTCCGTCGCCGCCAG  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5