BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909249
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76290.1 | Symbols: | AMP-dependent synthetase and ligase f... 2433 0.0
> AT1G76290.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:28623443-28625408 REVERSE LENGTH=1641
Length=1641
Score = 2433 bits (1317), Expect = 0.0
Identities = 1534/1641 (93%), Gaps = 6/1641 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGGAACAATTAGGTGCTCGGCGAATTACGTCCCGCTTACTCCGATCAGCTTCCTC 60
|||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 1 ATGGAAGGAACAATGAGGTGCTCAGCGAATTACGTCCCGCTTTCTCCGATCAGCTTTCTC 60
Query 61 GAGAGAGCCGCCGTCGCCTTTGGCCCCAGAACCTCCGTCGTGTATGGTGATATTCAGTAC 120
|||||||| || |||| ||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 61 GAGAGAGCTGCTGTCGTCTTCGGCTCCAGAACCTCTGTCGTGTATGGTGATATTCAGTAC 120
Query 121 ACTTGGCGA-CAAACACGTGACCGTTGCGTCCGCCTTGCCTCTGCTCTCTCCGACCTCGG 179
|| |||| | ||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 121 ACGTGGC-ACCAAACACGTGACCGTTGCGTCCGCCTTGCATCTGCTCTCTCTGACCTTGG 179
Query 180 TCTCTCCCGCCACGACGTTGTGGCTGCTTTAGCGCCAAATGTTCCTGCGTTATGTGAGCT 239
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TCTCTCTCGCCATGACGTTGTGGCTGCTTTAGCGCCAAATGTTCCTGCGTTATGCGAGCT 239
Query 240 TTATTTTGGAGCTCCGATGGCTGGATCAGTACTTTGCGTGTTGAACACGACCTTCAATTC 299
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 240 TTATTTTGGAGCTCCGATGGCTGGAGCAGTACTTTGCGTGTTGAACACGACATTCGATTC 299
Query 300 TCAGATGCTTGCGATGGCGCTGGAGAAAACGAAGCCAAAAGTCTTCTTCGTTGACTCTGA 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TCAGATGCTTGCGATGGCGCTGGAGAAAACGAAGCCAAAAGTATTCTTCGTTGACTCTGA 359
Query 360 GTTCCTCTCCGTCGCTGAAGAATCTCTCAGTCTCCTCTCAAACATCGAAGAACAACCTCT 419
||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 360 GTTCCTCTCTGTCGCTGAAGAATCTCTCAGTCTCCTCTCAAACATTGAAGAAAAACCTCT 419
Query 420 CATCATCACAATCACAGAAAATCAAACCGAGAAATCAAAATATGAAGAATACGAGGATTT 479
||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||
Sbjct 420 CATCATCACAATCACAGAAAATCCAACAGAGCAATCAAAATATGAACAATACGAGGATTT 479
Query 480 TCTCTCTTCCGGAAACCCTAATTTCATACCCCTACGACCGGTTGACGAATGCGATCCAAT 539
|||||| | |||||||||||||||| ||| ||||||| ||||||||||| ||||||||
Sbjct 480 TCTCTCCACTGGAAACCCTAATTTCAAACCAATACGACCAGTTGACGAATGTGATCCAAT 539
Query 540 CGCCCTCAACTTCACATCCGGAACCACATCCACGCCCAAATGTGTCGTCTATAGTCACCG 599
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 540 CGCCCTCAACTTCACATCTGGAACCACATCGACTCCCAAATGTGTCGTCTATAGTCATCG 599
Query 600 CGGTGCGTATCTGAACGCAACTGCTACTGGTGTTATGAATGAGATGAAACCAATGCCGGT 659
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CGGTGCCTATCTGAACGCAACTGCTGTTGGTGTTATGAATGAGATGAAACCAATGCCGGT 659
Query 660 TTATCTCTGGACAGTTCCTATGTACCATTGTAGCGGGTGGAGCTCTGTTTGGACAGTTGC 719
|||||| || |||||||||||||| ||||||||||||||| ||| | ||||||||||| |
Sbjct 660 TTATCTATGTACAGTTCCTATGTATCATTGTAGCGGGTGGTGCTATATTTGGACAGTTAC 719
Query 720 GGCTTTTGGAGGAGTCAACGTCTGTCTCAGGGAAGTCAACGACAAAGTTATATTTGATAG 779
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 GGCTTTTGGAGGAGTCATCGTCTGTCTCAGGGAAGTCAACGACGAAGTTATATTTGATAG 779
Query 780 TATCGTGAAGCACAAGGTAACTAACTTTGGTGGCTCGCCTCCGGTTCTCAACATGATTGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATCGTGAAGCACAAGGTAACTAACTTTGGTGGCTCGCCTCCGGTTCTCAACATGATTGC 839
Query 840 CAATGCACCAGACTCGGTCAAGAAGTCGTTCCCATGGACCGTACAGGTTATGAGCGGAGG 899
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TAATGCAAGAGACTCGGTCAAGAAGTCGTTTCCATGGACCGTACAGGTTATGAGCGGAGG 899
Query 900 ATCCTCGCCTCCTGAGGTCATGTT-AAGACTCAAGAAGCTAGGATTCAAAGTGATGATGG 958
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 900 ATCCTCTCCTCCTGAGGTCATGTTGAA-ACTCAAGAAGCTAGGATTCAAAGTGATGATGG 958
Query 959 CTTATGGATGCACGGAGGTGTATGGACTAGGAACAGCTTGTTTGTGGATGCCCGAGTGGG 1018
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTTATGGATGCTCGGAGGTGTATGGACTAGGAACAGCTTGTTTGTGGATGCCCGAGTGGG 1018
Query 1019 AGAATCTACCTGAAGAAGAGAGTTCAAGGCTCAAGGCAAGAGATGGTCTCAACCATTTCG 1078
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 AGACTCTACCTGAAGAGGAGAGTTTAAGGCTCAAGGCAAGAGATGGTCTCAACCATTTCG 1078
Query 1079 CCAAGGAAGCTGTCGATGTGTTGGACCCAACCACCATGAAATCGGTTCCACACGACGGCA 1138
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 CCAAGGAAGCTGTCGATGTATTGGACCCAACCACCATGAAATCGGTTCCACACGACGGAA 1138
Query 1139 AGACTATCGGGGTGATTATTCTCCGGGGGAATACCGTCATGAGCGGTTACTTCAAGGACA 1198
|||||||| |||| ||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1139 AGACTATCAGGGTAATTGCTCTCCGGGGAAATACAGTCATGAGCGGTTACTTCAAGGACA 1198
Query 1199 AGGAAGCCACTGAAGCAGCTTTTCGAGGTGGATGGTTCTGGAGTCGCGACATGGGAGTTA 1258
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1199 AGGAAGCCACTGAAGCGGCTTTTCGAGGTGGATGGTACTGGAGTCGCGACATGGGTGTTA 1258
Query 1259 TAGATCCTGATGGCTACATACAATATAAAGATAGGTCACAAGATGTTATAACATGCGGAG 1318
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1259 TAGATCCTGATGGCTACATACAATTTAAAGATAGGTCACAAGATGTTATAACATGCGGAG 1318
Query 1319 GAGAAATTATGGGGTCAAAAGAGATAGAAGGGATTCTCTATAGTCACCCCGCGGTTTATG 1378
||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1319 GAGAAATCGTGGGATCAAAGGAGATCGAAGGGATTCTCTATAGTCACCCGGCGGTTTATG 1378
Query 1379 AAGCAGCGGTAGTTGGTCGACCGGACGAAGCTTTAGGAGAATCGATGTGTGCATTCGTGA 1438
| |||| ||| || ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1379 ACGCAGGGGTCGTGGGTCGACCGGACGAAACTTTAGGAGAATCGATGTGTGCTTTCGTGA 1438
Query 1439 AGCTCATAGAAGGAGCTGAAGCGAAAGAGGAAGAGATCATTGAGTTCTGTGAGAGAAAGA 1498
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1439 AGCTCAAAGAAGGAGCTGAAGCGAGAGAGGAAGAGATCATTGAGTTCTGCAAGAGAAAGC 1498
Query 1499 TTGGGA-TCAAGAACATGAAGATGGTTCCAAAGACAGTAGTCTTCTCGGATGTTCCTAAG 1557
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1499 TTGGGAAT-AAGAACATGAAGATGATTCCAAAGACAGTAGTCTTCTCGGATGTTCCTAAG 1557
Query 1558 ATTCACACTGGGAAGATTCGGAAGAATGTTCTGAGAGAGATGGCCAAGAACATGGGTTAT 1617
| || ||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||
Sbjct 1558 ACTCCCACTGGGAAGATTCGAAAGAATGTTCTGAGAAAGATGGCCAAGGATATGGGTTAT 1617
Query 1618 GTTCCAGTGAAAGTTGTGGAG 1638
|||| | ||| || |||||||
Sbjct 1618 GTTCAATTGAGAGCTGTGGAG 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5