BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909252
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28... 2119 0.0
AT1G20610.1 | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7134790-713... 865 0.0
> AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394
REVERSE LENGTH=1347
Length=1347
Score = 2119 bits (1147), Expect = 0.0
Identities = 1249/1299 (96%), Gaps = 3/1299 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGGATCAGATGAGAACAGACACGGAGTCATTGGACCGATGAATCGACAACAAGGG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 ATGGGTGGATCGGATGAGAACAGACACGGAGTCATTGGACCGATGAATCGACAACAAGGG 111
Query 61 AGTTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGAGCACTGGGTAAT 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 112 GGTTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAAT 171
Query 121 ATAAACAAGAACATCATCGGAGCTCCGGTTTATCCTTGTGCTGTCAACAAAAGACCATTC 180
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 172 ATAAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGT---CAAGAGACCATTC 228
Query 181 ACTGAGAACAATGGGATATGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTT 240
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ACTGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTT 288
Query 241 ACTAGGAAGTTTGCTGTTCAGTTAGCTGAGAACAATCCCCAAATCCACAAGGAGGAAACC 300
|||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 289 ACTAGGAAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAGGAGGAAACC 348
Query 301 AAGAAATCAGACTTGATTTCGAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAA 360
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAA 408
Query 361 GGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGAC 420
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 409 GGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAGATTGAC 468
Query 421 CGAATGGAGGGGATTGAAATGGAAGATTCAAATGTTATTGATGTTGAAGTAGAAGAGTCT 480
|||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 469 AAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAAGAGTCT 528
Query 481 GTTATGGATATAGACAGCTGTGACAAGAACAATCCTTTAGCTGTAGTTGAATACATCGAT 540
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 529 GTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATACATTAAT 588
Query 541 GACATATATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGCGTACCGCCTAATTACATG 600
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 589 GACATATATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGTGTCCCGCCTAACTACATG 648
Query 601 GAGAATCAACATGACATTAACGAGAGGATGAGAGGAATCCTTATTGATTGGTTGATTGAG 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 649 GAGAATCAACATGACATTAACGAGAGGATGAGAGGAATCCTTTTTGATTGGTTGATTGAG 708
Query 661 GTACATTACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATCGAT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 GTACATTACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATTGAC 768
Query 721 AGATTTCTTGCGGTTCATCATCACATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACA 780
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 769 AGATTTCTTGCGGTTCATCAACATATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACA 828
Query 781 GCTATGTTGCTTGCTTGCAAATACGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTTATC 840
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 829 GCTATGTTACTTGCTTGCAAATATGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTAATC 888
Query 841 CTGATCTCTGACAAGGCTTACACTAGGACAGAGATTCTTGATATGGAGAAGTTAATGGCG 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGATCTCTGACAAGGCTTATACTAGGACAGAGATTCTTGATATGGAGAAGTTAATGGCG 948
Query 901 AATACCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AATACCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTC 1008
Query 961 AAAGCTTCACAATCTGACAAAAAGCTTGAGCTTCTATCATTCTTCATCATCGAGCTTTGT 1020
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1009 AAAGCTGCACAATCTGACAAAAAGCTTGAGCTTTTATCATTCTTCATGATCGAGCTTTGT 1068
Query 1021 CTAGTGGAGTACGAGATGCTTCAGTACACTCCTTCTCAGTTGGCTGCATCGGCGATCTAC 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TTAGTGGAGTACGAGATGCTTCAGTACACTCCTTCTCAGTTGGCTGCATCGGCGATCTAC 1128
Query 1081 ACTGCTCAGAGCACGCTTAAAGGATTCGAGGATTGGAGCAAAACCAGTGAGTTCCACTCA 1140
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1129 ACTGCTCAGAGCACACTTAAAGGATACGAGGATTGGAGCAAAACCAGTGAGTTCCACTCA 1188
Query 1141 GGCTACACCGAAGAAACGCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAG 1200
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GGCTACACCGAAGAAGCGCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAG 1248
Query 1201 GCAGGGATAGGGAAGTTAACAGGTGTTCACAGGAAATACAACACATCCAAATTTGGTTAT 1260
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GCAGGGACAGGGAAGCTAACAGGTGTTCACAGGAAATACAACACATCCAAATTTGGTTAT 1308
Query 1261 GCTGCAAGAATTGAACCAGCTGGGTTTCTTCTGCTGTGA 1299
|||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GCTGCAAGAATTGAACCAGCTGGGTTTCTTCTGCTGTGA 1347
> AT1G20610.1 | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7134790-7137781
REVERSE LENGTH=1833
Length=1833
Score = 865 bits (468), Expect = 0.0
Identities = 988/1229 (80%), Gaps = 75/1229 (6%)
Strand=Plus/Plus
Query 94 GGACAGACAAGAAGAGCACTGGGTAATATAAACAAGAACATCATC-GGAGCTCCGGT-TT 151
|||| ||||||||||||||| ||| ||| ||||||||||||| | | ||| || || ||
Sbjct 357 GGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCA-CTGAAGCGCC-GTCTT 414
Query 152 ATCCTTGTGCTGTCAACAAAAGACCA-TTCACTGAGAACA-ATGGGATATGTAACAAGAA 209
| |||| |||||||||||| ||| || || |||| || | |||| || ||| || ||
Sbjct 415 ACCCTTATGCTGTCAACAAGAGATCAGTT-TCTGA-AAGAGATGGCATTTGT---AATAA 469
Query 210 GATTCCACCTGTTCCAGTGCATCGACCAGTTACTAGGAAGTTTGCTGTTCAGTTAGCTGA 269
| ||||| | ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 470 -A--CCACC---T---GTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGA 520
Query 270 GAACAATCCCCAAATCCACAAGGAGGAAACCAAGAAATCAGACTT-GATTTCGAAC-GAA 327
| || || || |||| | |||||||| |||||| |||||| | |||| || |||
Sbjct 521 TCATAAGCCACATATCCGTGATGAGGAAACTAAGAAACCAGACTCAG-TTTC-AAGTGAA 578
Query 328 GCATTAGATA-GA--ATCATA-ACA-G-ATGT--G-GA-A--GAAGGAG---ACTTTAAT 372
| | ||| | || ||||| | | ||| | || | ||||||| ||| ||||
Sbjct 579 GAACCAGAGACGATTATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAAT 638
Query 373 GAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGACC-GAATGGAG-- 429
|| ||||||||||| ||||| |||||||| ||||| || |||||||| | || |||||
Sbjct 639 GAGCCAATGTTTGTACAACATACTGAAGCAATGCTGGAGGAGATTGAACAGA-TGGAGAA 697
Query 430 GG-GATTGAAATGGAAGATTCAAATGTTATTGATGTTGAAGTAGAAGAGTCTGTTATGGA 488
|| |||||||||||||||| || | | | ||| ||||||| |||| || ||
Sbjct 698 GGAGATTGAAATGGAAGATGCA---G--AC--A-----AAGAAGAAGAGCCTGTGATCGA 745
Query 489 TATAGACAGC-TGTGACAAGAACAATCCTTTAGCTGTAGTTGAATACATCGATGACATAT 547
||| || || ||||| ||||| |||||||| |||| |||||||| ||| |||| ||
Sbjct 746 TATTGAT-GCCTGTGATAAGAATAATCCTTTGGCTGCGGTTGAATATATCCATGATATGC 804
Query 548 ATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGCGTACCGCCTAATTACATGGAGAATC 607
|| |||||||||||| |||| | ||| ||||| || ||||| || ||||| ||||
Sbjct 805 ATACCTTCTACAAGAATTTTGAGAAACTTAGTTGCGTGCCTCCTAACTATATGGACAATC 864
Query 608 AACATGA-CATTAACGAGAGGATGAGAGGAATCCTTATTGATTGGTTGATTGAGGTACAT 666
|||| || | |||| ||||| |||||||||||||| ||||| ||||| |||||||| ||
Sbjct 865 AACAAGATC-TTAATGAGAGAATGAGAGGAATCCTCATTGACTGGTTAATTGAGGTGCAC 923
Query 667 TACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATCGATAGATTT 726
||||||||||| ||||||||||| || ||||| || ||||||||| ||||||| |||||
Sbjct 924 TACAAGTTTGAACTGATGGAGGAAACTCTTTATCTCACAATCAATGTCATCGACAGATTC 983
Query 727 CTTGCGGTTCATCATCACATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACAGCTATG 786
|||||||||||||| | |||| ||||||||||||||||||||| ||||| || ||| ||
Sbjct 984 CTTGCGGTTCATCA--A-ATCGTGAGGAAAAAGCTTCAGCTTGTTGGTGTTACTGCTTTG 1040
Query 787 TTGCTTGCTTGCAAATACGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTTATCCTGATC 846
|||||||| || ||||| |||||||||||||||||||| || |||||||| ||| |||||
Sbjct 1041 TTGCTTGCATGTAAATATGAAGAAGTTTCAGTTCCAGTGGTAGATGATCTCATCTTGATC 1100
Query 847 TCTGACAAGGCTTACACTAGGACAGAGAT-T-CTTGATATGGAGAAGTTAATGGCGAATA 904
|||||||| |||||| |||| | ||||| | || |||||||||||| ||||||| || |
Sbjct 1101 TCTGACAAAGCTTACTCTAG-A-AGAGAAGTGCTAGATATGGAGAAGCTAATGGCCAACA 1158
Query 905 CCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTCAAAG 964
|||||||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||
Sbjct 1159 CCTTGCAATTCAATTTCTCTCTACCAACTCCATATGTTTTCATGAAACGATTTCTCAAAG 1218
Query 965 CTTCACAATCTGACAAAAAGCTTGAGCTTCTATCATTCTTCATCATCGAGCTTTGTCTAG 1024
|| | ||||||||||| ||||||||| || |||||||||| || ||||||||||| || |
Sbjct 1219 CTGCCCAATCTGACAAGAAGCTTGAGATTTTATCATTCTTTATGATCGAGCTTTGCCTTG 1278
Query 1025 TGGAGTACGAGATGCTTCAGTACACT-CCTTCTCAGTTGGCTGCATCGGCGATCTACACT 1083
||||||| |||||||| |||| || || ||| || |||| || || || |||||||||
Sbjct 1279 TGGAGTATGAGATGCTAGAGTAT-CTTCCATCTAAGCTGGCGGCCTCAGCAATCTACACT 1337
Query 1084 GCTCAGAGCACGCTTAAAGGATTCGAGGATTGGAGCAAAACCAGTGAGTTCCACTCAGGC 1143
|||||| | || ||||| ||||| || || |||||||||||| ||||||| ||| |||||
Sbjct 1338 GCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGCAAAACCTGTGAGTTTCACACAGGC 1397
Query 1144 TACACCGAAGAAAC-GCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAGGC 1202
|||| |||| |||| ||| |||| |||| ||||||||||||||| ||| |||||||||||
Sbjct 1398 TACAACGAA-AAACAGCTACTGGCATGTGCGAGAAAGATGGTTGCTTTCCATCACAAGGC 1456
Query 1203 AGGGATAGGGAAGTTAACAGGTGTTCACAGGAAA-TACAACACATCCAAATT-TGGTTAT 1260
||| | ||||||| | ||||| |||||||| ||| ||||||||||| || || || | ||
Sbjct 1457 AGGAACAGGGAAGCTCACAGGAGTTCACAG-AAAGTACAACACATCTAAGTTCTG-TCAT 1514
Query 1261 GCTGCAAGAATTGAACCAGCTGGGTTTCT 1289
|||||||||| ||||||||||||||||||
Sbjct 1515 GCTGCAAGAACTGAACCAGCTGGGTTTCT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5