BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909257
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76370.1 | Symbols: | Protein kinase superfamily protein | ... 1829 0.0
AT1G20650.1 | Symbols: | Protein kinase superfamily protein | ... 717 0.0
> AT1G76370.1 | Symbols: | Protein kinase superfamily protein
| chr1:28648449-28650484 REVERSE LENGTH=1602
Length=1602
Score = 1829 bits (990), Expect = 0.0
Identities = 1096/1148 (95%), Gaps = 4/1148 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTGTTTCTCTTGTCTCAACACGCAAACTAATGACATGAGAATCAACATTGATACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATGAGGTGTTTCTCTTGTCTCAACACGCAAACTAATGACATGAGAATCAACATTGATACC 305
Query 61 CTCTCCGACCTAACCGATTATTCCTCAGTTGCCACAAGAAA-CGATCCAAGAGGGACAGG 119
||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||
Sbjct 306 CTCTCCGACCTAACCGATTATGCCTCAGTTGCCACAA-AAATCGATCCAAGAGGAACAGG 364
Query 120 GTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCTAAACCGGGAGGTGGCGC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 365 CTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCTAAACCGGGTGGTGGCGC 424
Query 180 TCGGAGTTTCACGTTCAAGGAGTTAGCCGCCGCCACCAAGAATTTCCGGGAGGTGAATAT 239
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 425 ACGGAGTTTCACGTTCAAGGAGTTAGCAGCCGCCACGAAGAATTTCCGGGAGGGGAATAT 484
Query 240 GATTGGAAAAGGAGGCTTTGGGAGTGTATACAAGGGACGTTTAGATTCAGGACAAGTGGT 299
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 TATAGGAAAAGGAGGCTTTGGGAGTGTCTACAAGGGACGTTTAGATTCAGGACAAGTGGT 544
Query 300 GGCGATCAAGCAATTAAATCCAGATGGGCATCAAGGAAATCAAGAATTCATAGTTGAGGT 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 545 GGCGATCAAGCAATTAAATCCAGATGGACATCAAGGAAATCAAGAATTCATAGTTGAAGT 604
Query 360 CTGCATGCTTAGCGTCTTTCATCATCCAAATCTTGTAACTCTAATCGGTTACTGCACTTC 419
||| |||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||
Sbjct 605 CTGTATGCTTAGCGTCTTCCATCATCCAAATCTAGTAACTTTAATCGGTTACTGTACTTC 664
Query 420 TGGTGCTCAGAGACTT-TTGGTTTATGAATACATGCCAATGGGTAGCTTAGAAGATCATC 478
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGGTGCTCAGAGACTTCTT-GTTTATGAATACATGCCAATGGGTAGCTTAGAAGATCATC 723
Query 479 TTTATGATCTTGAGCCTGATCAGATTCCGCTAAGCTGGTATACCCGAATGAAAATCGCGG 538
||| |||||||||||||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 724 TTTTTGATCTTGAGCCTGATCAGACTCCACTAAGCTGGTATACTCGGATGAAAATCGCGG 783
Query 539 TTGGTGCTGCTCGTGGGATTGAGTATCTTCATTGTAAAATAAGCCCATCTGTGATTTACC 598
||||||| ||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct 784 TTGGTGCAGCTCGTGGGATAGAGTATCTCCACTGTAAAATAAGCCCGTCTGTGATTTACC 843
Query 599 GTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAATTTAGCGTCAAACTCTCTGACT 658
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 844 GTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAATTTAGCGTCAAGCTCTCTGATT 903
Query 659 TTGGACTCGCCAAGGTCGGTCCTGTGGGGAACCGGACACATGTGTCCACTCGAGTCATGG 718
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 904 TTGGACTCGCTAAGGTTGGTCCTGTGGGGAACCGGACACATGTGTCGACTCGAGTCATGG 963
Query 719 GTACTTACGGATACTGTGCTCCAGAATATGCAATGAGCGGAAGATTAACCATTAAGTCGG 778
|||||||||||||||||||||||||||| ||||||||||||||||| || || || ||||
Sbjct 964 GTACTTACGGATACTGTGCTCCAGAATACGCAATGAGCGGAAGATTGACTATAAAATCGG 1023
Query 779 ATATCTATAGCTTCGGTGTAGTGTTGCTTGAACTGATTTCTGGCAGGAAGGCCATTGATT 838
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1024 ATATCTATAGCTTTGGTGTAGTGTTGCTTGAGCTTATTTCTGGCAGGAAGGCCATTGATT 1083
Query 839 TGAGTAAACCAAACGGAGAGCAGTACCTTGTTGCTTGGGCTCGACCGTATCTCAAGGATC 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1084 TGAGTAAACCAAACGGAGAGCAGTACCTTGTTGCTTGGGCTAGACCGTATCTCAAAGATC 1143
Query 899 CTAAGAAATTTGGACTTCTAGTTGACCCGTTGCTACGGGGAAAGTTCTCGAAGAGGTGTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CTAAGAAATTTGGACTTCTAGTTGACCCGTTGCTACGGGGAAAGTTCTCGAAGAGGTGTC 1203
Query 959 TTAACTACGCGATTGCTATAACCGAGATGTGCCTAAATGACGAAGCGAATCACCGGCCAA 1018
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1204 TTAACTACGCGATTTCTATAACCGAGATGTGCCTAAACGACGAAGCGAATCACCGGCCAA 1263
Query 1019 AAATAGGAGATGTGGTGGTGGCATTTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AAATAGGAGATGTGGTGGTGGCATTTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAG 1323
Query 1079 ATCGAAGAGCGGCTCGCAAGTCTACGGACTCTAACCGGTTAAGAGGGGAAACAAAACAGA 1138
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1324 ATCGAAGAACGGCTCGCAAGTCTACGGACTCTAACCGGTTAAGACGGGAAACAAAACAGA 1383
Query 1139 GTTACTAA 1146
|||| |||
Sbjct 1384 GTTATTAA 1391
> AT1G20650.1 | Symbols: | Protein kinase superfamily protein
| chr1:7158244-7160526 REVERSE LENGTH=1828
Length=1828
Score = 717 bits (388), Expect = 0.0
Identities = 804/1002 (80%), Gaps = 40/1002 (4%)
Strand=Plus/Plus
Query 103 GATCCAAGAGGGACAGGGTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCT 162
||| ||| ||| |||| ||| | || || || ||||| ||||| ||||||||||| ||
Sbjct 616 GATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCG 675
Query 163 AAACCGGGAGGTGGCGCTCGGAGTTTCACGTTCAAGGAGTTAGCCGCCGCCACCAAG-AA 221
| ||| || ||||| |||||||| |||||||||||||||||||| || || | |||| ||
Sbjct 676 ATACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTA-CAAGAAA 734
Query 222 TTTCCGGGAGGTGAATATGATTGGAAAAGGAGGCTTTGGGAGTGTATACAAGGGACGTTT 281
|||||||| || ||| || | ||| ||||||| ||||| || || || |||||||||||
Sbjct 735 CTTCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTT 794
Query 282 AGATTCAGGACAAGTGGTGGCGATCAAGCAATTAAATCCAGATGGGCATCAAGGAAATCA 341
||||||||||||||| ||||| || |||||||| ||||||||||||| |||||| || |
Sbjct 795 AGATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCG 854
Query 342 AGAATTCATAGTTGAGGT-CTGCATGCTTAGCGTCTTTCATCATCCAAATCTTGTAAC-T 399
||| || ||||| || || || ||||||||| | || |||||||| ||||| || || |
Sbjct 855 AGAGTTTATAGTAGAAGTTCTT-ATGCTTAGCTTATTGCATCATCCCAATCTCGTTACAT 913
Query 400 CTAATCGGTTACTGCACTTCTGGTGCTCAGAGACTT-TTGGTTTATGAATACATGCCAAT 458
| ||||||||||| |||||||||| ||| |||||| ||| | |||||||||||||||||
Sbjct 914 -TGATCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTG-TCTATGAATACATGCCAAT 971
Query 459 GGGTAGCTTAGAAGATCATCTTTATGATCTTGAGCCTGATCA-GATTCCGCTAAGCTGGT 517
||| |||||||||||||| |||| |||||||||| || |||| || || ||||||||
Sbjct 972 GGGAAGCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAA-CCATTAAGCTGGA 1030
Query 518 ATACCCGAATGAAAATCGCGGTTGGTGCTGCTCGTGGGATTGAGTATCTTCATTGTAAAA 577
|||| ||||||||||||||||||||||| ||||| || || ||||||||||| || | |
Sbjct 1031 ATACTCGAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAG 1090
Query 578 -TAAGCCCATCTGTGATTTACCGTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAA 636
||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1091 CTAA-CCCGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAG 1149
Query 637 TTTAGCGTC-AAA-CTCTCTGACTTT-GGACTCGCCAAGGTCGGTCCTGTGGG-GAACCG 692
|| || || ||| ||||| || ||| ||| | || || ||||||| || || || | |
Sbjct 1150 TTCAG--TCCAAAACTCTCGGA-TTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATC-G 1205
Query 693 GACACATGTGTCCACTCGAGTCATGGGTACTTACGGATACTGTGCTCCAGAATATGCAAT 752
|| ||||| || ||||| |||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 1206 AACTCATGTATCGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAAT 1265
Query 753 GAGCGG-AAGATTAACCATTAAGTCGGATATCTA-TAGCTTCGGTGTAGTGTTGCTTGAA 810
|||||| || |||||| |||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1266 GAGCGGGAA-ATTAACTGTTAAATCGGATATCTACT-GCTTCGGTGTAGTGTTGCTTGAG 1323
Query 811 CTGATTTCTGGCAGGAAGGCCATTGATTTGAG-T-AAAC-CAAACGGAGAGCAGTACCTT 867
|||||| |||| || || || |||||||| || | ||| ||| || |||||| | |||
Sbjct 1324 CTGATTACTGGGAGAAAAGCTATTGATTT-AGGTCAAAAGCAA--GGCGAGCAGAATCTT 1380
Query 868 GTTGCTTGGGCTCGACCGTATCTCAAGGATCCTAAGAAATTTGGAC-TTCTAGTTGACCC 926
||| ||||| | || || || |||||||||| ||||| ||||||| || |||| || ||
Sbjct 1381 GTTACTTGGTCACGTCCATACCTCAAGGATCAGAAGAAGTTTGGACATT-TAGTGGATCC 1439
Query 927 GT-TGCTACGGGGAAAGTTCTCGAAGA-GGTGTCTTAA-CTACGCGATTGCTATAACCG- 982
|| | ||||| ||||| | | | |||| ||||| |||| ||| |||||||| || | |
Sbjct 1440 GTCT-CTACGAGGAAAATACCC-AAGACGGTGT-TTAAACTATGCGATTGCGATTATTGC 1496
Query 983 AGATGTGCCTAAATGACGAAGCGAATCACCGGCCAAAAATAGGAGATGTGGTGGTGGCAT 1042
| ||||| || ||||| ||||| || | || || ||||| || | || ||||||
Sbjct 1497 A-ATGTGTCTTAATGAAGAAGCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCAC 1555
Query 1043 TTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAGATCGAA 1084
| |||||| ||||| | ||||||| |||| |||||| |||||
Sbjct 1556 TAGAGTACTTAGCCGCACAGAGCAGATCTCATGAAGCTCGAA 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5