BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909351
Length=4113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21580.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 549 7e-155
> AT1G21580.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:7557262-7565803 REVERSE LENGTH=7209
Length=7209
Score = 549 bits (297), Expect = 7e-155
Identities = 588/722 (81%), Gaps = 45/722 (6%)
Strand=Plus/Plus
Query 3289 CCAAAGAGATTAGTGATCAAAAATGATA-AATCTGTTTGGATT-AGAAATTGTAATCAGC 3346
||||||||||| |||||| ||||| | ||| |||| || || | ||| |||| ||||
Sbjct 5813 CCAAAGAGATTGGTGATCGGCAATGA-AGAATATGTTCGG-TTCGGGAATGGTAACCAGC 5870
Query 3347 TTGCCAGAGATCCAAAGAAACGAACTTGTGTGTTGACAAATGAGAAGGTCAGATGGAGCC 3406
||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 5871 TTGTCAGAGATCCAAAGAAACGAACTCGTGTGTTGGCAAATGAGAAAGTCAGATGGAGCC 5930
Query 3407 TGAACAATGTCCGGTTGCGAG-TGGCTAAAAAGATGAAATACTGCCAGTTTTTCACAAGA 3465
|| |||||| ||||||||| | |||||||||||| ||| |||||||||||||||||||||
Sbjct 5931 TGCACAATGCCCGGTTGCG-GTTGGCTAAAAAGAAGAAGTACTGCCAGTTTTTCACAAGA 5989
Query 3466 TTTGGGAAATGCAACAAAGATGATGGAAAATGTCCATATGTTCATGATCCTTCAAAAATT 3525
||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||
Sbjct 5990 TTTGGGAAATGCAACAAAGATGACGGAAAATGTCCCTATGTTCATGATCCCTCGAAAATT 6049
Query 3526 GCAGTTTGCACAAAATTCCTGAGTGGATTGTGTGCCAATCCAGAGTGCAAATTGACTCAT 3585
|| |||||||| ||||| ||| |||||||||||| ||| || | ||||||||||||||
Sbjct 6050 GCTGTTTGCACCAAATTTTTGAATGGATTGTGTGCAAATGCAAATTGCAAATTGACTCAC 6109
Query 3586 AAGGT--T-C-A-ACA--A--C-TAAAT---C--ATTGCCC-CAGAGGACTATGCAATAA 3629
||||| | | | | | | | | | | | ||| | || ||| |||||||| ||
Sbjct 6110 AAGGTCATTCCAGAAAGGATGCCTGATTGTTCTTATTATCTGCA-AGGCCTATGCAACAA 6168
Query 3630 CGAGCCATGTCCATATAGGCATGTGCATGTTCA-TCAAAAT-GCTGCAATATGTGAAGGG 3687
||| ||||||||||||||||||||||||| || || | | || | |||||||| |||
Sbjct 6169 TGAGGCATGTCCATATAGGCATGTGCATGT-CAATCCGA-TCGCCCCTATATGTGATGGG 6226
Query 3688 TTTTTAAGGGGCTACTGTTCTGATGAAAATGAGTGTCGGAAGAAGCACACATACACCTGC 3747
||||||| ||| |||||||| || | | | ||||||||||||||||| | |||| ||||
Sbjct 6227 TTTTTAAAGGGATACTGTTCCGAAGGAGACGAGTGTCGGAAGAAGCATTCCTACAACTGC 6286
Query 3748 CCAGTTTTCGAAGCCACAGGATCTTG-TCCTCAAGGGTCTGAA-TGCAAACTCCACCATC 3805
|| |||||||||||||| ||||| || || |||||| | |||| ||||| |||||||| |
Sbjct 6287 CCGGTTTTCGAAGCCACTGGATCATGCTC-TCAAGGAT-TGAAATGCAAGCTCCACCACC 6344
Query 3806 CCAAAAACCTAAGCAAAGGAAAGAAA-AGGAAAAGAGCAAGTGAATCATGGCATAAAAAT 3864
|||| |||| ||||||||||| |||| || |||||| ||| ||| ||| || ||||||
Sbjct 6345 CCAAGAACCAAAGCAAAGGAA-GAAAGAGAAAAAGAACAAACGAACCATCACAGAAAAAT 6403
Query 3865 GTCAGTGGGCGTTACTTTGGTTCCCCGCACAAACATC-TT-CCAGAGTCTGAGCCAATGT 3922
| | || ||||||||||| |||| | ||||| |||| || || |||||||||||||||
Sbjct 6404 GCCCGTAGGCGTTACTTTAGTTCACTTCACAA-CATCCTTTCC-GAGTCTGAGCCAATGG 6461
Query 3923 T-TGTCAATGAGG--TTGCTGCTGACGGTGTAGTTTTTGGAAGGGAA-GCCCTTGACTTT 3978
| | ||||| ||| || || ||||| ||| ||||||||||| |||| ||| | || |||
Sbjct 6462 TAT-TCAAT-AGGCGTT-CTACTGACAGTGAAGTTTTTGGAATGGAAAGCC-TCGATTTT 6517
Query 3979 AT 3980
||
Sbjct 6518 AT 6519
Score = 231 bits (125), Expect = 3e-59
Identities = 484/647 (75%), Gaps = 65/647 (10%)
Strand=Plus/Plus
Query 2581 TTGGAATCTTCAAA-TCCAAGTAAAATTTTATATGTAAAGAGGAAA-GCAAATCAGTTTG 2638
||||| |||||||| | ||| | ||| ||||||| |||| |||| ||||||||||| |
Sbjct 4970 TTGGATTCTTCAAATTTGAAG-AGAATGGTATATGTCAAGA-GAAAGGCAAATCAGTTGG 5027
Query 2639 TAACAGCTTCAGATATGCATGGTGCAAGT-A-ATAGCAGGATTCCTCCCTGTGTTAGCTA 2696
| ||||||||||||| |||| || |||| | | | || ||||||| ||| || | | ||
Sbjct 5028 TTGCAGCTTCAGATATTCATGATGTAAGTCAGA-ACCA-GATTCCTTCCTCTGATGGGTA 5085
Query 2697 CTTCAGGAGAAGTAAAAGTCAACTAGTTA-GAGATTCAGAGAGCC-TTGCTAATCAGGAG 2754
||| | | ||||||||| ||| ||||| | || |||||||||||| |||| ||||| |
Sbjct 5086 CTTTAAGCGAAGTAAAAATCAGCTAGTAAGGA-ATTCAGAGAGCCGTTGC-AATCA-G-T 5141
Query 2755 AAATTT--TTATCTTATGAAGC-TTCAAATTCACAGA-CAGCTGCGAAGATGGTGTCAAA 2810
||||| || || |||| || || | || ||| || ||||||| || ||||| || |
Sbjct 5142 CAATTTCCTTGCCTGATGATGCATT-AGATACAC-GATCAGCTGCAAACATGGTTTCGGA 5199
Query 2811 AAGATCC-TCTAGCTTGGCGCTT-TCTGAATTTGCTATTGTGAGACCCTTTAATCATTTT 2868
|||| || ||||||| || || ||||| | |||| | || |||| ||||| || |
Sbjct 5200 AAGA-CCATCTAGCTCAGC-ATTCTCTGACTCTGCTGTCATGCGACCATTTAAGCAATCA 5257
Query 2869 AATTTTTCTTTGGTCTGGACGCTGAAA-GAACCAATA-TCAAGAAAGGCCAATAGAGTTC 2926
|| |||||| |||| ||||||| ||| || || | |||| || ||| || || ||
Sbjct 5258 AAGTTTTCTCTGGTTTGGACGC-AAAATGATCC-GCAGCCAAG-AATGCCCAT--AGCTC 5312
Query 2927 ACATAAGCCTTCAGAAGATGGTCCCGCAGCCAGTTTCTTGGAAAAGA-TCGACTTACTGG 2985
|||| | |||||| || || ||||| | ||| | ||||||||| | ||| ||||||
Sbjct 5313 ACATGCGAAATCAGAATATTGTGCCGCAACTTGTTCCCTGGAAAAGAGT-GACGTACTGG 5371
Query 2986 AGAAGATTAATGAATC-CAGCCTC-GGTTCTGCTAAATGGTTCTTTTTCCATCGCCAGTT 3043
|||||||||||||| | ||| || | || | | ||||||||| || | | || || |
Sbjct 5372 AGAAGATTAATGAA-CTCAGTGTCTGCTT-TCCGAAATGGTTC-TTCT-C-TCAACA--T 5424
Query 3044 TGATGACAGAACATTCCATCTCCAGTCGAAAATTGCGGATGATGAGAAAAAGACATACAG 3103
| | | | ||| | | | ||| || | ||||| | | || ||||| |||
Sbjct 5425 T-A-G-CCGAA-A----GT-T---GTC---AA-T---GATGA-G-G-AAGAGACACACAA 5462
Query 3104 TTTACACAAGATCAACTAATGGGTATTCGCTTACAAAGTCCAAAGTGTTAAGTGTTGGTG 3163
|||||||||||||||||||||||||||| || | ||| || || || |||||||||||||
Sbjct 5463 TTTACACAAGATCAACTAATGGGTATTCCCTCAGAAAATCTAAGGTATTAAGTGTTGGTG 5522
Query 3164 GGTCGCATTTAAAATGGTCCAAGTCCATTGAGAGAGGCTCGAAGAAA 3210
|||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 5523 GGTCGCATTTAAAATGGTCCAAGTCCATTGAGAGAGACTCGA-GAAA 5568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 204982129098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5