BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909351 Length=4113 Score E Sequences producing significant alignments: (Bits) Value AT1G21580.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 549 7e-155 > AT1G21580.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:7557262-7565803 REVERSE LENGTH=7209 Length=7209 Score = 549 bits (297), Expect = 7e-155 Identities = 588/722 (81%), Gaps = 45/722 (6%) Strand=Plus/Plus Query 3289 CCAAAGAGATTAGTGATCAAAAATGATA-AATCTGTTTGGATT-AGAAATTGTAATCAGC 3346 ||||||||||| |||||| ||||| | ||| |||| || || | ||| |||| |||| Sbjct 5813 CCAAAGAGATTGGTGATCGGCAATGA-AGAATATGTTCGG-TTCGGGAATGGTAACCAGC 5870 Query 3347 TTGCCAGAGATCCAAAGAAACGAACTTGTGTGTTGACAAATGAGAAGGTCAGATGGAGCC 3406 ||| |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| Sbjct 5871 TTGTCAGAGATCCAAAGAAACGAACTCGTGTGTTGGCAAATGAGAAAGTCAGATGGAGCC 5930 Query 3407 TGAACAATGTCCGGTTGCGAG-TGGCTAAAAAGATGAAATACTGCCAGTTTTTCACAAGA 3465 || |||||| ||||||||| | |||||||||||| ||| ||||||||||||||||||||| Sbjct 5931 TGCACAATGCCCGGTTGCG-GTTGGCTAAAAAGAAGAAGTACTGCCAGTTTTTCACAAGA 5989 Query 3466 TTTGGGAAATGCAACAAAGATGATGGAAAATGTCCATATGTTCATGATCCTTCAAAAATT 3525 ||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||| Sbjct 5990 TTTGGGAAATGCAACAAAGATGACGGAAAATGTCCCTATGTTCATGATCCCTCGAAAATT 6049 Query 3526 GCAGTTTGCACAAAATTCCTGAGTGGATTGTGTGCCAATCCAGAGTGCAAATTGACTCAT 3585 || |||||||| ||||| ||| |||||||||||| ||| || | |||||||||||||| Sbjct 6050 GCTGTTTGCACCAAATTTTTGAATGGATTGTGTGCAAATGCAAATTGCAAATTGACTCAC 6109 Query 3586 AAGGT--T-C-A-ACA--A--C-TAAAT---C--ATTGCCC-CAGAGGACTATGCAATAA 3629 ||||| | | | | | | | | | | | ||| | || ||| |||||||| || Sbjct 6110 AAGGTCATTCCAGAAAGGATGCCTGATTGTTCTTATTATCTGCA-AGGCCTATGCAACAA 6168 Query 3630 CGAGCCATGTCCATATAGGCATGTGCATGTTCA-TCAAAAT-GCTGCAATATGTGAAGGG 3687 ||| ||||||||||||||||||||||||| || || | | || | |||||||| ||| Sbjct 6169 TGAGGCATGTCCATATAGGCATGTGCATGT-CAATCCGA-TCGCCCCTATATGTGATGGG 6226 Query 3688 TTTTTAAGGGGCTACTGTTCTGATGAAAATGAGTGTCGGAAGAAGCACACATACACCTGC 3747 ||||||| ||| |||||||| || | | | ||||||||||||||||| | |||| |||| Sbjct 6227 TTTTTAAAGGGATACTGTTCCGAAGGAGACGAGTGTCGGAAGAAGCATTCCTACAACTGC 6286 Query 3748 CCAGTTTTCGAAGCCACAGGATCTTG-TCCTCAAGGGTCTGAA-TGCAAACTCCACCATC 3805 || |||||||||||||| ||||| || || |||||| | |||| ||||| |||||||| | Sbjct 6287 CCGGTTTTCGAAGCCACTGGATCATGCTC-TCAAGGAT-TGAAATGCAAGCTCCACCACC 6344 Query 3806 CCAAAAACCTAAGCAAAGGAAAGAAA-AGGAAAAGAGCAAGTGAATCATGGCATAAAAAT 3864 |||| |||| ||||||||||| |||| || |||||| ||| ||| ||| || |||||| Sbjct 6345 CCAAGAACCAAAGCAAAGGAA-GAAAGAGAAAAAGAACAAACGAACCATCACAGAAAAAT 6403 Query 3865 GTCAGTGGGCGTTACTTTGGTTCCCCGCACAAACATC-TT-CCAGAGTCTGAGCCAATGT 3922 | | || ||||||||||| |||| | ||||| |||| || || ||||||||||||||| Sbjct 6404 GCCCGTAGGCGTTACTTTAGTTCACTTCACAA-CATCCTTTCC-GAGTCTGAGCCAATGG 6461 Query 3923 T-TGTCAATGAGG--TTGCTGCTGACGGTGTAGTTTTTGGAAGGGAA-GCCCTTGACTTT 3978 | | ||||| ||| || || ||||| ||| ||||||||||| |||| ||| | || ||| Sbjct 6462 TAT-TCAAT-AGGCGTT-CTACTGACAGTGAAGTTTTTGGAATGGAAAGCC-TCGATTTT 6517 Query 3979 AT 3980 || Sbjct 6518 AT 6519 Score = 231 bits (125), Expect = 3e-59 Identities = 484/647 (75%), Gaps = 65/647 (10%) Strand=Plus/Plus Query 2581 TTGGAATCTTCAAA-TCCAAGTAAAATTTTATATGTAAAGAGGAAA-GCAAATCAGTTTG 2638 ||||| |||||||| | ||| | ||| ||||||| |||| |||| ||||||||||| | Sbjct 4970 TTGGATTCTTCAAATTTGAAG-AGAATGGTATATGTCAAGA-GAAAGGCAAATCAGTTGG 5027 Query 2639 TAACAGCTTCAGATATGCATGGTGCAAGT-A-ATAGCAGGATTCCTCCCTGTGTTAGCTA 2696 | ||||||||||||| |||| || |||| | | | || ||||||| ||| || | | || Sbjct 5028 TTGCAGCTTCAGATATTCATGATGTAAGTCAGA-ACCA-GATTCCTTCCTCTGATGGGTA 5085 Query 2697 CTTCAGGAGAAGTAAAAGTCAACTAGTTA-GAGATTCAGAGAGCC-TTGCTAATCAGGAG 2754 ||| | | ||||||||| ||| ||||| | || |||||||||||| |||| ||||| | Sbjct 5086 CTTTAAGCGAAGTAAAAATCAGCTAGTAAGGA-ATTCAGAGAGCCGTTGC-AATCA-G-T 5141 Query 2755 AAATTT--TTATCTTATGAAGC-TTCAAATTCACAGA-CAGCTGCGAAGATGGTGTCAAA 2810 ||||| || || |||| || || | || ||| || ||||||| || ||||| || | Sbjct 5142 CAATTTCCTTGCCTGATGATGCATT-AGATACAC-GATCAGCTGCAAACATGGTTTCGGA 5199 Query 2811 AAGATCC-TCTAGCTTGGCGCTT-TCTGAATTTGCTATTGTGAGACCCTTTAATCATTTT 2868 |||| || ||||||| || || ||||| | |||| | || |||| ||||| || | Sbjct 5200 AAGA-CCATCTAGCTCAGC-ATTCTCTGACTCTGCTGTCATGCGACCATTTAAGCAATCA 5257 Query 2869 AATTTTTCTTTGGTCTGGACGCTGAAA-GAACCAATA-TCAAGAAAGGCCAATAGAGTTC 2926 || |||||| |||| ||||||| ||| || || | |||| || ||| || || || Sbjct 5258 AAGTTTTCTCTGGTTTGGACGC-AAAATGATCC-GCAGCCAAG-AATGCCCAT--AGCTC 5312 Query 2927 ACATAAGCCTTCAGAAGATGGTCCCGCAGCCAGTTTCTTGGAAAAGA-TCGACTTACTGG 2985 |||| | |||||| || || ||||| | ||| | ||||||||| | ||| |||||| Sbjct 5313 ACATGCGAAATCAGAATATTGTGCCGCAACTTGTTCCCTGGAAAAGAGT-GACGTACTGG 5371 Query 2986 AGAAGATTAATGAATC-CAGCCTC-GGTTCTGCTAAATGGTTCTTTTTCCATCGCCAGTT 3043 |||||||||||||| | ||| || | || | | ||||||||| || | | || || | Sbjct 5372 AGAAGATTAATGAA-CTCAGTGTCTGCTT-TCCGAAATGGTTC-TTCT-C-TCAACA--T 5424 Query 3044 TGATGACAGAACATTCCATCTCCAGTCGAAAATTGCGGATGATGAGAAAAAGACATACAG 3103 | | | | ||| | | | ||| || | ||||| | | || ||||| ||| Sbjct 5425 T-A-G-CCGAA-A----GT-T---GTC---AA-T---GATGA-G-G-AAGAGACACACAA 5462 Query 3104 TTTACACAAGATCAACTAATGGGTATTCGCTTACAAAGTCCAAAGTGTTAAGTGTTGGTG 3163 |||||||||||||||||||||||||||| || | ||| || || || ||||||||||||| Sbjct 5463 TTTACACAAGATCAACTAATGGGTATTCCCTCAGAAAATCTAAGGTATTAAGTGTTGGTG 5522 Query 3164 GGTCGCATTTAAAATGGTCCAAGTCCATTGAGAGAGGCTCGAAGAAA 3210 |||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 5523 GGTCGCATTTAAAATGGTCCAAGTCCATTGAGAGAGACTCGA-GAAA 5568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 204982129098 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5