BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909394
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superf... 1168 0.0
AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein 3... 60.2 3e-08
> AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:29204747-29206217 FORWARD LENGTH=1071
Length=1071
Score = 1168 bits (632), Expect = 0.0
Identities = 731/777 (94%), Gaps = 14/777 (2%)
Strand=Plus/Plus
Query 5 AAGATGCCAATTCGTTTCGGTTTGTCACCAAGGATCTTGTTACTCTTTCTCACGATGTTA 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 137 AAGATGCCAATTCGTTTCGGTTTGTCACCAAGGATCTTGTTACTCTTTCTCACCATATTA 196
Query 65 TC---GTTTGGATACCGATTAGAACTCGTGTGAATTATTTATTATATTCCACAGGAACAA 121
|| ||||||||| |||||||||||| |||| | | | || |||||||||||||
Sbjct 197 TCAGGGTTTGGATAACGATTAGAACTCCTGTG----A---A-T-TACTCCACAGGAACAA 247
Query 122 AATGGTCAGAATCAGCTCGAGTATTCACGATCATTAACTCATGTGATCAAAAGATCTGGC 181
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 248 AATGGTCAGAATCAGCTCGAGTATTCACGATCATAAACTCATGTGACCAAACGATCTGGC 307
Query 182 CGGCGATAACTCCCGGAGAAAACTTCAACGGTGGAGGATTCGAGCTCAAACCGGGACAAT 241
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 308 CGGCGATAACTCCAGGAGAAAACTTCAACGGAGGAGGATTCGAGCTCAAACCGGGCCAAT 367
Query 242 CCATCGTATTCAACGCACCGGTAGGCTGGTCAGGCCGAATATGGGGACGAACCGGCTGCA 301
||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||| || |
Sbjct 368 CCATCGTATTCCACGCACCAGTAGGCTGGTCAGGCAGAATTTGGGGACGAACCGGTTGTA 427
Query 302 AATTCGACTCAACCGGAACCGGAACCTGCGAAACCGGTTCATGCGGGTCAACTCTAAAAT 361
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 428 AATTCGACTCAACCGGAACCGGAACATGCGAAACCGGTTCATGCGGATCAACTCTAAAAT 487
Query 362 GTTCAGCCTCCGGAAAACCACCAGCTTCACTAGCTGAATTCACATTAGCC-AAGTTGGAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 488 GTTCAGCCTCCGGAAAACCACCAGCTTCACTAGCTGAATTCACATTAGCCGCA-TTGGAT 546
Query 421 TTCTACGACGTGAGCCTCGTCGACGGATTCAATCTCCCGATGTCGGTGACTCCGATGAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTCTACGACGTGAGCCTCGTCGACGGATTCAATCTCCCGATGTCGGTGACTCCGATGAAC 606
Query 481 GGAATAGGAAACTGCAGCGTCGCCGGCTGCGTAGCTGATTTGAGGCCACATTGTCCACAG 540
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 607 GGAAAAGGAAACTGCAGCGTCGCCGGTTGCGTAGCTGATTTGAGGCCACATTGTCCGCAG 666
Query 541 GAGCTCGCCGTGAAATCAAACGGGAAAGTGATATCGTGTAGGAGTGCGTGTGATGTGTTT 600
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 667 GAGCTCGCAGTGAAATCAAACGGGAAAGTCATATCGTGTAGGAGTGCTTGTGATGTGTTT 726
Query 601 GATAGAGATGAGTATTGTTGCAGAGGAGTTTATGGGAATCCAGTGGTGTGTCAACCAACT 660
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 727 GATAGAGATGAGTATTGTTGTAGAGGAGTTTATGGGAACCCAGTTGTGTGTCAACCAACT 786
Query 661 TATTACTCAAAGATCTTCAAGCAAGCTTGTCCTACTGCTTATAGTTATGCTTATGATGAT 720
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 787 TATTACTCAAAGATCTTTAAACAAGCTTGTCCTACTGCTTATAGTTATGCTTATGATGAT 846
Query 721 CCGACCAGTATTATGACTTGCACTGCCTCTGATTACGTCATCTCTTTCTGTTCCTCC 777
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 847 CCGACCAGTATTATGACTTGCACTGCCTCTGATTACGTCATTTCTTTCTGTTCCTCC 903
> AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein
3 | chr1:28174378-28175383 FORWARD LENGTH=909
Length=909
Score = 60.2 bits (32), Expect = 3e-08
Identities = 37/39 (95%), Gaps = 2/39 (5%)
Strand=Plus/Plus
Query 416 TGGATTTCTACGACGTGAGCCTCGTCGACGGATT-CAAT 453
||||||||||||||||||||||||||||||| || ||||
Sbjct 405 TGGATTTCTACGACGTGAGCCTCGTCGACGG-TTACAAT 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5