BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909403
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77780.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1406 0.0
> AT1G77780.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:29248300-29249528 REVERSE LENGTH=1229
Length=1229
Score = 1406 bits (761), Expect = 0.0
Identities = 921/998 (92%), Gaps = 11/998 (1%)
Strand=Plus/Plus
Query 30 TACTCTTCTTTTTATTTTAGCCAGATTAACTGCGGCCGGAAACATGAA-TCCGTTTGTCG 88
||| ||||||||| ||| |||||||||||| | |||||||| ||||| ||| || | ||
Sbjct 15 TACGCTTCTTTTTCTTTCAGCCAGATTAACCACCGCCGGAAATATGAATTCC-TTCGCCG 73
Query 89 GAGTCTGTGATGGAAGAAACGGAGACAATCTCCCATCTCC-GGCACAAA-TAGTATCTCT 146
|||| ||| |||||||||| |||||||||||||||||||| | || ||| | || |||||
Sbjct 74 GAGTATGTTATGGAAGAAATGGAGACAATCTCCCATCTCCAGCCA-AAACT-GTGTCTCT 131
Query 147 ATACAAGAAAATAAACGTCGCTGGGATAAGACTATACGAGCCTGTCCCCGACCTCATCGT 206
|||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||
Sbjct 132 ATACAAGAAAATAAACGTCGGTGGGATAAGACTCTACGAGCCTTTCCCTGACCTCATCGT 191
Query 207 CTCATTACAAGGAACTGGTCTTCTCGTAGCCATCGGACCAAAAAACGAAGAAATCAAAAC 266
|||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 192 CTCATTACAAGGAACTGGTCTTCTTGTAGCCATCGGACCAAGAAACGAAGCAATCAAAAC 251
Query 267 ATTAGCCGAACATTACGAATTTGCCTTAAATTGGGTA-AAAACGTTTATAGCACCATACA 325
|||||||||| | ||| |||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 252 ATTAGCCGAAGAATACCAATTTGCCTTAAATTGGG-ATAAAACATTTATAGCACCATACA 310
Query 326 AAAACGTAGCTTTCAATTGGATCACTGTGGGAAACGAAGTGATCGAAGGAGAGATCGGAC 385
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 311 AAAACGTAGCTTTCAATTGGATAACCGTGGGAAACGAAGTGATAGAAGGAGAGATCGGAC 370
Query 386 GTTACGTGCCACAAGCCATGAAGAATATAAAAGCTGCATTGACCGAAATCGGAAACTCAA 445
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 371 GTTACGTGCCACAAGCCATGAAAAATATAAAAGCTGCGTTGACCGAAATCGGAAACTCAA 430
Query 446 AGATCCACGTCACCACCGTCATATCCACAGCCGCACTCGCTAACTCTTACCCACCATCAG 505
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGATCCACGTCACCACTGTCATATCCACAGCCGCACTCGCTAACTCTTACCCACCATCAG 490
Query 506 CCGGAGTATTTAAACCGGCGATAACCGAACTTATAACCGAAATCGTATCGATTCTTAGCT 565
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CCGGAGTATTTAAACCGGCAATAACCGAACTTATAACCGAAATCGTATCGATTCTTAGCT 550
Query 566 CTACCGATTCACCACTCATGGTCAACGTTTACCCTTATTTCGCTTACGCATCAGACCCTA 625
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CTACCGATTCACCGCTCATGGTCAACGTTTACCCTTATTTCGCTTACGCATCAGACCCTA 610
Query 626 CCCAAGTGTCATTAGAATACGCAACGTTCCGTTCGACTTCACCGGTAGTGACAGACGGAA 685
||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 611 GCCACGTGTCACTGGAATACGCAACGTTCCGTTCGACTTCACCGGTAGTGACCGACGGAA 670
Query 686 AATACCAATACACGAACATATTTGATGCAACGTTGGATGCTTTCAACGCAGCGTTAGAGA 745
||||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||
Sbjct 671 AATACCAATACACAAATATATTCGATGCAACGTTGGATGCTTTCAACGTGGCATTAGAGA 730
Query 746 AGATCAACCACGGAAGCGTGAAGGTGTACGTAGCGGAGACTGGTTGGCCTACTAGAGGAA 805
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 731 AGATCAACCACGGAAGCGTGAAGGTCTACGTAGCGGAGACCGGTTGGCCTACTAGAGGGA 790
Query 806 ATGTTCCATACACGAGCGTGGAGAATGCTCGTGCCTATAACCAGGGGTTGCTTAAGAAAC 865
||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 791 ATGATCCATACACAAGCGTGGAGAACGCTCGTGCTTATAACCAGGGGTTGCTTAAGAAAC 850
Query 866 TAACCACAGGTCATAAGGGTACTCCGAGACGGCCTAATGTCCCTGTGATGACTTTTTTCT 925
||||||||||| | | |||||| || || ||||| ||||| || ||||| ||||||||||
Sbjct 851 TAACCACAGGT-A-A-GGGTACGCCAAGGCGGCCCAATGTTCCAGTGATAACTTTTTTCT 907
Query 926 TTGAAATGTTCAATGAGGATTTGAAAGAAGGAGAGGTAGAAAAAAGCTTCGGATTCTTCA 985
| |||||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||
Sbjct 908 TCGAAATGTTCAATGAAGATTTGAAACAAGGAGCGGTTGAACAAAGCTTCGGATTCTTCG 967
Query 986 ATCCTGATATGGCTCCTGTCTACGATATGTGGAATATA 1023
||||| ||||||||||||||||||||||||||||||||
Sbjct 968 ATCCTAATATGGCTCCTGTCTACGATATGTGGAATATA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5