BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909412 Length=1056 Score E Sequences producing significant alignments: (Bits) Value AT1G77860.1 | Symbols: KOM | Rhomboid-related intramembrane ser... 1724 0.0 > AT1G77860.1 | Symbols: KOM | Rhomboid-related intramembrane serine protease family protein | chr1:29282643-29284458 REVERSE LENGTH=1056 Length=1056 Score = 1724 bits (933), Expect = 0.0 Identities = 1016/1057 (96%), Gaps = 2/1057 (0%) Strand=Plus/Plus Query 1 ATGGAGGTTCCTACAGAGCCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGTTCCTACAGAGTCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60 Query 61 TTTTCCACTTCCAACGCCGGCGATTCTAGCTGGGACAAAATCTCCTTCTTCCGTCACCGT 120 ||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 61 TTTACCACTTCTAACGCCGGCGATTCTAGCTGGGACAAGATCTCATTCTTCCGTCACCGT 120 Query 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180 Query 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGTAACTCTCACGGTCACTGCGCC 240 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGGAACTCTCACGGTCACTGCTCC 240 Query 241 GCCAAACTCCTTGGCCGATTCTCTTTCCAGCCTCTCTCCGAGAATCCTATGCTCGGTCCC 300 || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 241 GCTAAACTCCTTGGCCGATTCTCTTTCCAGTCTCTCTCCGAGAATCCTATGCTTGGTCCC 300 Query 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAATA-CTCTGACGGAGAATCA 359 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAA-AGCTCTGACGGAGAATCA 359 Query 360 TGAGATTTGGCGTATTTTGACATCTCCGTGGCTGCACAGTGGATTGTTTCATCTATTCAT 419 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 360 TGAGATTTGGCGTATTTTGACATCTCCATGGCTGCACAGTGGATTATTTCATCTATTCAT 419 Query 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAATTTGGACCATTGAG 479 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAGTTTGGACCATTGAG 479 Query 480 GATTGCAGTCATATACCTACTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GATTGCAGTCATATACTTCCTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539 Query 540 TCGAAACATCTCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCGGAACATCCCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599 Query 600 TTCTGCACTTGCAAAGAACTGGAATCTATATACCGGCAAGATTTCAGCCTTGGTGATAAT 659 |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct 600 TTCTGCACTTGCAAAGAACTGGAATCTATATAACAGCAAGATTTCAGCCTTGGCGATAAT 659 Query 660 ATTCACTATCTTCACTGTGAATATCCTGATAGGCTTTCTCCCTTTCATAGACAATTTTGC 719 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 660 ATTCACTATCTTCACTGTGAATTTCCTGATAGGCTTTCTCCCTTTCATAGACAACTTTGC 719 Query 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779 Query 780 ACTGAGACAGATGCCTCCATCTCATAAGGGAAAATTGTTTGAAGATGATACGAACAGATC 839 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 780 ACTGAGACAGATGCCTCCATCTCATAAGGGGAAATTGTTTGAAGATGATATGAACAGATC 839 Query 840 CACAAGGCTTAAAGATCAGTTTGATAGACCGGTGTTACGGATTATATGCCTGGTCGTGTT 899 ||||||||||||||| |||||||| |||||||| ||| |||||||||||||| ||||||| Sbjct 840 CACAAGGCTTAAAGAACAGTTTGACAGACCGGTATTAAGGATTATATGCCTGCTCGTGTT 899 Query 900 TTGTGGAATGCTTGCTGGGGTTCTATTAGCAGTGTGCTGGGGCGTCAATCTTAACCGTCA 959 ||||||||| ||||| |||||||||||||||| |||||||| |||||||| |||||||| Sbjct 900 TTGTGGAATACTTGCCGGGGTTCTATTAGCAGCATGCTGGGGAGTCAATCTCAACCGTCA 959 Query 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAATAGATGGAGCTGCAGTGACAT 1019 ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| Sbjct 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAAAAAATGGAGCTGCAGCGACAT 1019 Query 1020 GACTACTTCCTGCGAGGTATATTCATTTAAACCATAA 1056 |||||||||||||||||||||||||| |||||||||| Sbjct 1020 GACTACTTCCTGCGAGGTATATTCATCTAAACCATAA 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51791405557 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5