BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909412
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77860.1 | Symbols: KOM | Rhomboid-related intramembrane ser... 1724 0.0
> AT1G77860.1 | Symbols: KOM | Rhomboid-related intramembrane serine
protease family protein | chr1:29282643-29284458 REVERSE
LENGTH=1056
Length=1056
Score = 1724 bits (933), Expect = 0.0
Identities = 1016/1057 (96%), Gaps = 2/1057 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTTCCTACAGAGCCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTTCCTACAGAGTCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60
Query 61 TTTTCCACTTCCAACGCCGGCGATTCTAGCTGGGACAAAATCTCCTTCTTCCGTCACCGT 120
||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 TTTACCACTTCTAACGCCGGCGATTCTAGCTGGGACAAGATCTCATTCTTCCGTCACCGT 120
Query 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180
Query 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGTAACTCTCACGGTCACTGCGCC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGGAACTCTCACGGTCACTGCTCC 240
Query 241 GCCAAACTCCTTGGCCGATTCTCTTTCCAGCCTCTCTCCGAGAATCCTATGCTCGGTCCC 300
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 241 GCTAAACTCCTTGGCCGATTCTCTTTCCAGTCTCTCTCCGAGAATCCTATGCTTGGTCCC 300
Query 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAATA-CTCTGACGGAGAATCA 359
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAA-AGCTCTGACGGAGAATCA 359
Query 360 TGAGATTTGGCGTATTTTGACATCTCCGTGGCTGCACAGTGGATTGTTTCATCTATTCAT 419
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 360 TGAGATTTGGCGTATTTTGACATCTCCATGGCTGCACAGTGGATTATTTCATCTATTCAT 419
Query 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAATTTGGACCATTGAG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAGTTTGGACCATTGAG 479
Query 480 GATTGCAGTCATATACCTACTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATTGCAGTCATATACTTCCTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539
Query 540 TCGAAACATCTCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGGAACATCCCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599
Query 600 TTCTGCACTTGCAAAGAACTGGAATCTATATACCGGCAAGATTTCAGCCTTGGTGATAAT 659
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 600 TTCTGCACTTGCAAAGAACTGGAATCTATATAACAGCAAGATTTCAGCCTTGGCGATAAT 659
Query 660 ATTCACTATCTTCACTGTGAATATCCTGATAGGCTTTCTCCCTTTCATAGACAATTTTGC 719
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 660 ATTCACTATCTTCACTGTGAATTTCCTGATAGGCTTTCTCCCTTTCATAGACAACTTTGC 719
Query 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779
Query 780 ACTGAGACAGATGCCTCCATCTCATAAGGGAAAATTGTTTGAAGATGATACGAACAGATC 839
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 780 ACTGAGACAGATGCCTCCATCTCATAAGGGGAAATTGTTTGAAGATGATATGAACAGATC 839
Query 840 CACAAGGCTTAAAGATCAGTTTGATAGACCGGTGTTACGGATTATATGCCTGGTCGTGTT 899
||||||||||||||| |||||||| |||||||| ||| |||||||||||||| |||||||
Sbjct 840 CACAAGGCTTAAAGAACAGTTTGACAGACCGGTATTAAGGATTATATGCCTGCTCGTGTT 899
Query 900 TTGTGGAATGCTTGCTGGGGTTCTATTAGCAGTGTGCTGGGGCGTCAATCTTAACCGTCA 959
||||||||| ||||| |||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 900 TTGTGGAATACTTGCCGGGGTTCTATTAGCAGCATGCTGGGGAGTCAATCTCAACCGTCA 959
Query 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAATAGATGGAGCTGCAGTGACAT 1019
||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAAAAAATGGAGCTGCAGCGACAT 1019
Query 1020 GACTACTTCCTGCGAGGTATATTCATTTAAACCATAA 1056
|||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GACTACTTCCTGCGAGGTATATTCATCTAAACCATAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5