BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909428

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78040.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   289    8e-78


> AT1G78040.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr1:29345838-29347107 FORWARD LENGTH=938
Length=938

 Score =  289 bits (156),  Expect = 8e-78
 Identities = 179/190 (94%), Gaps = 2/190 (1%)
 Strand=Plus/Plus

Query  7    TGCTCTAAAATCTCCGTTGGACGCGAGAAGTCTCGCGTGATCTTGAACCATTACAGTGGC  66
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  483  TGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTACAGTGGC  542

Query  67   ATTGCCTCGCAGATCA-AGCACGCTAACAACATGGGATTCGAGAAAGAAGTGAGCGATGT  125
            |||||||||||||||| | || ||||||||||||||||| |||||||||||||| |||||
Sbjct  543  ATTGCCTCGCAGATCAGA-CATGCTAACAACATGGGATTTGAGAAAGAAGTGAGTGATGT  601

Query  126  GTTCTGCTCTGCTCTGTTTCACAAGTATATGGTTGATGAAGATGAGGATGATATTCAAAG  185
            ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| 
Sbjct  602  GTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAGGATGATATTAAAAA  661

Query  186  CCATCTCTAA  195
            ||||||||||
Sbjct  662  CCATCTCTAA  671



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8651832372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5