BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909433

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664386...   128    5e-29


> AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664386-3665039 
FORWARD LENGTH=654
Length=654

 Score =  128 bits (69),  Expect = 5e-29
 Identities = 99/113 (88%), Gaps = 3/113 (3%)
 Strand=Plus/Minus

Query  7    GTGACGCGGCCGCCGTGTGCGGTGGAAGATTTGAGGCCGAAGAGAGATTGTGTGTTGGCC  66
            ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  208  GTGACGCGGCCGCCGCGAGCGGTGGAAGATTTGAGGCCGAAGAGAGATTGTGTGTTGGCA  149

Query  67   AACGGGAGGGATCTGGGGTT-ACTTTGTTTTTTGTTGACGGTGAAGAAAAGAG  118
            ||||||||||||||| || | | || || | | |||||||| | || ||||||
Sbjct  148  AACGGGAGGGATCTGAGGCTGA-TTGGTGTCT-GTTGACGGCGGAGGAAAGAG  98



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5