BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909440
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78140.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1637 0.0
> AT1G78140.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:29401759-29403946
REVERSE LENGTH=1314
Length=1314
Score = 1637 bits (886), Expect = 0.0
Identities = 1008/1066 (95%), Gaps = 11/1066 (1%)
Strand=Plus/Plus
Query 1 ATGACGGTTGTTTCCGGTCGATTCTCAACGGCGTTTCTCCCTACTTGTTTTTCCTTATCG 60
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 75 ATGACGGTTGTTTCCGGTCGATTCTCAACGGCGTTGCTCCCTACTTGCTTTTCCTTGTCG 134
Query 61 CGGTTGCATTCCGTC-AGCTACGCCGCTCAAAGATGTGTTGTTTTTGTTTCCAGATCAGC 119
||||||||||||||| || ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 135 CGGTTGCATTCCGTCAAG-TACGCCGCTCAAAGACGGGTTGTTTTCGTTTCCAGATCAGC 193
Query 120 TCACGCCTCATCAGCCTCCGTCTCCGTCGAGACGAATTCGAATGTACG--CGTGGGCTCT 177
||||||||| ||||||||||||||||| ||||| ||||||||| | || |||| | |
Sbjct 194 TCACGCCTCTTCAGCCTCCGTCTCCGTTGAGACAAATTCGAAT-T-CGAATGTGGATTTT 251
Query 178 GTTATC--G-AGAAGGAGAAGACCAGAGGAGAGAAGAAGATTCTAGCTTGTCCCATCTGT 234
|||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 252 GTTATCGAGAAGAAGGATAAGAACAGAGGAGAGAAGAAGATTCTAGCTTGTCCCATCTGT 311
Query 235 TATAACTCCTTAGCATGGAGTAGTCAACCTAATGGATTAATAGAATCTGCTGCCTCTGGT 294
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TATAACTCCTTAGCATGGATTAGTCAACCTAATGGATTAATAGAATCTGCTGCCTCTGGT 371
Query 295 ACTCAAGTACAATGCAATACATGTAAAAGGAGTTACTTGGGTAATGAGACGCATCTTGAT 354
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 372 ATTCAAGTACAATGCAATACATGTAAAAGGAGTTACTCGGGTAATGAGACGCATCTTGAT 431
Query 355 TTGGCTGTGGCTAGTGGAAGCAAGAGATACAGTGAACCAATGCCTCTTTCCACTGAGTTA 414
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 432 TTGGCTGTTGCTAGTGGAAGCAAGAGATACAGTGAACCGATGCCTCTTTCCACTGAGTTA 491
Query 415 TTCAGGACTCCATTAGTCTCGTTCCTTTATGAGAGGGGTTGGCGTCAGAATTTCATATGG 474
|| ||||||||| | |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 492 TTTAGGACTCCACTGGTCTCGTTTCTCTATGAGAGGGGTTGGCGTCAGAATTTCATATGG 551
Query 475 GGAGGTTTTCCAGGACCAGAGAAAGAGTTTGAAATGGCTAAAGACTACCTGAAGCCTGTT 534
||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 552 GGAGGTTTTCCAGGACCAGAGAAAGAGTTTGAAATGGCTAAGGCCTATCTGAAGCCTGTT 611
Query 535 TTGGGAGGCAATATCATTGATGCTAGTTGTGGAAGTGGGATGTTCTCAAGGTTATTCGCT 594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 612 TTGGGAGGCAATATCATTGATGCTAGTTGTGGAAGTGGGATGTTCTCGAGGTTATTCACT 671
Query 595 AGAAGTGAGT-TGTTTTCTCTGGTTATTGCCCTTGATTACTCAGAGAATATGCTGCGACA 653
|||||||| | | ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 672 AGAAGTGA-TCTATTTTCTCTGGTTATTGCTCTAGATTACTCAGAGAATATGCTGCGACA 730
Query 654 GTGCTATGAACTCTTAAATCAAGAAGAAAACTTTCCCAACAGAGAGAAACTTGTTCTAGT 713
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 731 ATGCTATGAACTCTTAAATAAAGAAGAAAACTTTCCCAACAAAGAGAAACTTGTTCTAGT 790
Query 714 CCGAGCAGACATTGCTAGACTCCCTTTCCTTTCGGGTTCAGTTGACGCTGTCCATGCTGG 773
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CCGAGCTGACATTGCTAGACTCCCTTTCCTTTCGGGTTCAGTTGACGCTGTCCATGCTGG 850
Query 774 TGCTGCTCTGCATTGCTGGCCTTCACCATCCTCAGCCGTTGCTGAGATAAGCCGTGTTCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGCTGCTCTGCATTGCTGGCCTTCACCATCCTCAGCCGTTGCTGAGATAAGCCGTGTTCT 910
Query 834 TAGACCTGGAGGAGTATTTGTGGCCACCACATTTATCTATGACGGTCCATTCAGTTTTAT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TAGACCTGGAGGAGTATTTGTGGCCACCACATTTATCTATGACGGTCCATTCAGTTTTAT 970
Query 894 CCCCTTTTTGAAGAATCTTCGTCAGGAATTAATGAGATATTCAGGTTCTCACATGTTCCT 953
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 971 CCCCTTCTTGAAGAATCTTCGTCAGGAAATAATGAGATATTCAGGTTCTCACATTTTCCT 1030
Query 954 GAATGAACGTGAGCTTGAAGATCTCTGCAAAGCCTGTGGACTCGTTGGCTTCACTCGTGT 1013
||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 1031 AAATGAACGTGAGCTTGAAGATATCTGCAAAGCCTGTGGTCTCGTTAACTTCACTCGTGT 1090
Query 1014 TAGAAACGGGCCATTTATAATGCTATCCGCCACAAAACCCAGCTAA 1059
||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1091 TAGAAACGGGCCATTTATAATGCTATCTGCAACAAAACCCAGCTAA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5