BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909457
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78290.2 | Symbols: | Protein kinase superfamily protein | ... 1635 0.0
> AT1G78290.2 | Symbols: | Protein kinase superfamily protein
| chr1:29457205-29459142 REVERSE LENGTH=1517
Length=1517
Score = 1635 bits (885), Expect = 0.0
Identities = 984/1033 (95%), Gaps = 2/1033 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGGTATGAGATAGTGAAGGATATTGGGTCTGGTAATTTCGGAGTAGCAAAGCTT 60
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 234 ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTT 293
Query 61 GTTCGTGAGAAATTTTCCAAAGAGCTTTTCGCTATTAAGTTCATCGAGAGAGGCCAAAAG 120
|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 294 GTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAG 353
Query 121 ATTGATGAACATGTACAAAGAGAAATCATGAATCACAGGTCACTCATCCATCCCAATATA 180
|||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||
Sbjct 354 ATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATA 413
Query 181 ATAAGATTCAAGGAGGTTTTGTTGACGGCAACACATTTGGCGCTAGTAATGGAATACGCC 240
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 414 ATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCC 473
Query 241 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGGAGATTCAGTGAAGACGAGGCA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 474 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 533
Query 301 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 593
Query 361 CATAGAGATTTAAAGCTAGAGAACACTTTA-TTGGATGGAAGTGAAGCGCCACGCGTAAA 419
|||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| |||||
Sbjct 594 CATAGAGATTTAAAGCTAGAGAACACGTTACTTG-ATGGAAGCGAAGCGCCACGTGTAAA 652
Query 420 GATTTGCGACTTCGGATATTCAAAATCAGGAGTTCTCCATTCGCAACCAAAGACCACTGT 479
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 653 GATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGT 712
Query 480 AGGAACACCTGCTTACATTGCGCCTGAAGTGCTCTCCAAGAAAGAGTATGACGGCAAAAT 539
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 713 AGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAAT 772
Query 540 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTCATGCTTGTTGGTGCTTATCCTTT 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTT 832
Query 600 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAAACCATCGGTCGGATTCTCAAAGTTCA 659
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 833 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCA 892
Query 660 GTATTCCATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 719
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 952
Query 720 ATTCATTGCCAACACTGAAAAGAGAATAAGGATAGAGGAGATAAAGAATCATTCTTGGTT 779
|||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 953 ATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTT 1012
Query 780 TCTCAAGAATTTGCCGGTAGAGATGTCTCAAGGATCATTGATGATGAATGGTCCATCGAC 839
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1013 TCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGAC 1072
Query 840 TCAAACAGTGGAAGAGATAGTGTGGATCATTGAGGAAGCTCGGAAACCGATCACAGTAGC 899
||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1073 TCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGC 1132
Query 900 TACTGGACTCTCCGGTGCTGGTGTCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAC 959
|||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1133 TACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAG 1192
Query 960 CAGTATGGATCTCGATGACTTGGACACCGATTTTGACGACATCGATACCGCTGATCTCCT 1019
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1193 CAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCT 1252
Query 1020 TTCCCCTATGTGA 1032
||||||| |||||
Sbjct 1253 TTCCCCTTTGTGA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5