BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909475
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78470.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1360 0.0
> AT1G78470.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein (TAIR:AT1G67390.1); Has 40 Blast
hits to 40 proteins in 4 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:29521770-29523191
FORWARD LENGTH=1224
Length=1224
Score = 1360 bits (736), Expect = 0.0
Identities = 916/1002 (91%), Gaps = 15/1002 (1%)
Strand=Plus/Plus
Query 1 ATGAAACACACCAAAAATCTTATCCTTGCAAATTTTAATGGTCACCTCGTACCAACAATT 60
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
Sbjct 34 ATGAAACACACCAAAAATCTTATCCTTGCAAATTTTAATGGTCGCTTCGCACCAACAGGT 93
Query 61 GAAGCCTATGTGCTTAAGCTTTCCCCAGAGATATTCTACCACCCAAAG-CTAAGAACACT 119
|||| | ||||||| ||||| ||| |||||| |||| |||| || ||| |||||||||||
Sbjct 94 GAAGACAATGTGCTCAAGCTGTCCACAGAGACATTCAACCATCC-AAGCCTAAGAACACT 152
Query 120 CTCGCTATATCAATACATATTACAGGATGCACATGCCTTTAACAATTGTAGGAATCTCAA 179
|||||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||
Sbjct 153 CTCGCTATATCAATACATATTACAAGATGCACAAGCTTTTAACAATTGTAAAAATCTCAA 212
Query 180 GCACCTTGAACTCTTGCAAATCTTTGCTGAGATTGGTGTTTTCAACGAAGTCATCTCGTC 239
| ||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 213 GTACCTTGACCTGTTTCAAATCTTTGCTGAGGTTGATGTTTTCAACGAAGTCATCTCGTC 272
Query 240 TTGCCCCTCCCTGGAGGTTCTTATCCTACAAATCATTTTCTTCAACCCCAGTGGTCATTT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTGCCCCTCCCTCGAGGTTCTTATCCTACAAATCATTTTCTTCAACCCCAGTGGTCATTT 332
Query 300 GAAGATTGATCATAAAAATTTAAGGATCTTGTCCATCTCATGCAACCAAATTGATAGCAT 359
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 333 GAAGATTGATCATAAAACGTTAAGGATCTTGTCCATGTCATGCAACCAAATTGATAGCAT 392
Query 360 TGAAGTGCGTGCAACTCGTCTTGATATTCTCTCCATAGAAAATATCCTATGTGAGAGTGA 419
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 393 TGAAGTGCGTGCAGCTCGTCTTGATATTCTCTCCATAGAATATATCCCATGTGAGAGTGA 452
Query 420 TAAGGTCGTTCTCGAAATCCCTAGACTCCCGTTTGGTAGAAACTATTGGGTAGCAGGAAG 479
||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 453 TAACGTCGTTCTCGAAATTCCTAGACTCCAGTTTGGTAGAAACTATTGGGTAGCAGGAAG 512
Query 480 GCTCTTTCCTCATACCAGCATCAATATCTCATGTCCCCCTAAGAAG-AACGAAAGCAGTG 538
||||| |||||||| |||||||| ||||||||||||||| ||||| || ||||||| |
Sbjct 513 ACTCTTGCCTCATACTAGCATCAACATCTCATGTCCCCCTCAGAAGCAA-GAAAGCAACG 571
Query 539 GGATGGCG-A--GGCCT-CTCAACAATGTAACATTTCTTGCATCTTTATCTGTGAGTTTA 594
|||||| | | || | | |||| ||| ||||| | ||||||||||||||||||||||
Sbjct 572 GGATGGTGAAGTGGGATAC-CAACTATGCAACATCACCTGCATCTTTATCTGTGAGTTTA 630
Query 595 GATTTGAAGAATCCTCGAGAAGTCGAGGTGCTAAGGAAAATGTTAGCTGTTTGGACTGAA 654
||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||
Sbjct 631 GATTTGAAGAATCCTCGAGAAGTAGAAGTGCTAAGGAAAATCTTAGCTGTGTGGACTGAA 690
Query 655 AAAATGATAGAACTTGAAATATCATTTAAGCATAACAATTCTCTTGGGGAAGAAGGCAAA 714
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 691 AAAATGATAGAAGTTGAAATATCATTTAAGAATAACAATCCTCTTGGGGAAGAAGGCAAT 750
Query 715 TCTTCTAAAGGTGGAGCA-AATAACAAGCTGTGGGAGAAGGCAGAACCGTTTCCCAATGC 773
|||||| | ||||||||| || ||||| | |||||||||||||||||||||||||||||
Sbjct 751 TCTTCTGACGGTGGAGCACAA-AACAATTTATGGGAGAAGGCAGAACCGTTTCCCAATGC 809
Query 774 TGATTTTCGCGTGGATACTATATGGATGCACAATTTCA-GCGGTTCAAGTAAAGAACAAT 832
||| ||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 810 TGACTTTCGTGTGGATACTATATGGATGCACAATTTCAAG-GGTTCAAATAAAGAACAAT 868
Query 833 TTGCACTAGCTTCGCGTTTTGTGATGCAAAAGACAGTAATGAAGAAGATGATGATTAAGA 892
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TTGCACTAGCGTCGCGTTTCGTGATGCAAAAGACAGTAATGAAGAAGATGATGATTAAGA 928
Query 893 CCTCATCTGACGAAAAGAAGAAGAAA-AGGATAGAAGCGGCAGTTGCCAAGCTAAAGGAA 951
| |||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 929 CATCATTTGATGAAAAGAAGAAGAAAGAG-ATAGAAGCGGCAGTTGCCAAGCTAAAGGAA 987
Query 952 CTTCCAAAAGGTAACAAGGAGCTTAGTATCGAATGCTTCTAA 993
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 988 CTTCCAAAAGGTAACGAGGAGCTTAGTATCGAATGCTTCTAA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5