BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909505
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78780.2 | Symbols: | pathogenesis-related family protein |... 1103 0.0
> AT1G78780.2 | Symbols: | pathogenesis-related family protein
| chr1:29621340-29622447 REVERSE LENGTH=840
Length=840
Score = 1103 bits (597), Expect = 0.0
Identities = 641/663 (97%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 169 CAGGTTCAATGGAGGTATGGTCTCCCTCCAGACTTCAATAGTGTGAACCAGCTCTTTGAA 228
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 71 CAGGTTCAATGGAGGTATGATAACCCTCCAGACTTCAATAGTGTGAACCAGCTCTTTGAA 130
Query 229 GAAGGCCAGACCAAGGTGTGGCCACAAGGTTCGTTAGAAGAGACTGTGCAAAACGCAATC 288
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 131 GAAGGCCAGACTAAGGTGTGGCCAGAAGGTTCGTTAGAAGAGACAGTGCAAAACGCGATC 190
Query 289 AAGTCATGGGAGATGGAGTTCTCACATAAGATCCGTTTACAGGACTTCAAGACAATAAAC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 191 AAGTCATGGGAGATGGAGTTCTCACATAAGATCCGTTTACAGGACTTCAAGACTATAAAC 250
Query 349 CCTGAGAAATTTAAGCTCTTTGTCAATGGGAGAGAAGGTTTATCAGCTGAAGAGACGCTT 408
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CCTGAGAAGTTTAAGCTCTTTGTCAATGGGAGAGAAGGTTTATCAGCTGAAGAGACGCTT 310
Query 409 AGGCTTGGGAGTTACAATGCTTTGCTCAAGAACTCTTTGCCTGAAGAGTTTCAGTACTAT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AGGCTTGGGAGTTACAATGCTTTGCTCAAGAACTCTTTGCCTGAAGAGTTTCAGTACTAT 370
Query 469 AAGCCAGAGAAAGAGAGCTTTGAGTCATCACATGACGCCTTTAGATCTGCTTTACCACGC 528
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAGCCCGAGGAAGAGAGCTTTGAGTCATCACATGACGCCTTTAGATCTGCTTTACCACGC 430
Query 529 GGGTTTGCGTGGGAAATACTCTCTGTGTACTCGGGACCGCCTGTTATAGCCTTCAAGTTT 588
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 431 GGGTTTGCGTGGGAAATACTCTCTGTGTACTCGGGGCCTCCTGTTATAGCCTTCAAATTT 490
Query 589 AGACACTGGGGATACTTTGAAGGAACTTTCAAAGGTCATGCTCCTACTGGGGAAATGGTT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGACACTGGGGATACTTTGAAGGAACTTTCAAAGGTCATGCTCCTACTGGGGAAATGGTT 550
Query 649 CAATTCATGGGTCTAGGAGTTCTAAAGGTTGATGAAACGCTTAGAGCAGAGGAGATTGAG 708
|||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 551 CAATTCCTGGGTCTAGGAGTTCTAAAGGTTGACGAATCACTTAGAGCAGAGGAGATTGAG 610
Query 709 ATTTACTATGATCCAGGAGAGCTGTTCGGGGAACTACTCAAGGGACCTCCTATATCAGAG 768
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 611 ATTTACTATGATCCAGGAGAGCTGTTCGGGGGACTACTCAAGGGACCTCCTATATCAGAG 670
Query 769 ACCAAAACCACAGACAGAGGGGACAACACTGCAGACAAACAAAGCTGCCCATTCACACAC 828
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 671 ACCAAAACCACAGACAGTGGAGACAACACTGCAGAGAAACAAAGCTGCCCATTCACACAC 730
Query 829 TAA 831
|||
Sbjct 731 TAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5