BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909539
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79090.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3764 0.0
> AT1G79090.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Topoisomerase II-associated protein PAT1 (InterPro:IPR019167);
BEST Arabidopsis thaliana protein match is: Topoisomerase
II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr1:29749127-29753307 REVERSE LENGTH=3000
Length=3000
Score = 3764 bits (2038), Expect = 0.0
Identities = 2251/2353 (96%), Gaps = 18/2353 (1%)
Strand=Plus/Plus
Query 24 TCCCGTGACTGAGGATCTTAAGAATTTTGGAGATAATCCTTCAGGTGATACAATGTTTGA 83
|||||| ||| ||||||||||||| |||||||||||| || ||||| | |||||||||||
Sbjct 323 TCCCGTAACTCAGGATCTTAAGAAATTTGGAGATAATTCTACAGGTAACACAATGTTTGA 382
Query 84 TGCATCTCAGTATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTTGGTGGATT 143
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 383 TGCATCTCAATATGCCTTTTTTGGGAACGATGTTGTCGAGGAGGTTGAGCTGGGTGGATT 442
Query 144 GGATGAGGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA 203
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GGAAGAAGAAGATGAGATTTTGTCTTTCACTGGAATAGCAGAAGACTTTTCATTTGATAA 502
Query 204 GGAAGAGGTTGAAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC 263
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGAAGAGGTTGGAGATTCTAGACTTCTGTCTGACGTTGATGATCTTGCTAGTACTTTTTC 562
Query 264 AAAGTTGAATAGGGAACCTGATGTATATAG-AAGTACAGGGCCAATCACTGATAGGCGAT 322
|||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 563 AAAGTTGAATAGGGAACCTGATGTGTATAGTAA-TACGGGGCCAATCACTGATAGGCGAT 621
Query 323 CAA-TACAGAATTCTCTAGCTGCTGAGTGGACCCATGGGGAGGAGTTGCCAAATTGGTAC 381
||| | ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 622 CAAGT-CAGAATTCTTTAGCTGCTGAGTGGACCCATGGGGAAGAGTTACCAAATTGGTAC 680
Query 382 GGCCGGCCAATACTGGACTCTGATGCCATTAAAGATGACAAGGCGTGGTCAGCACAGCCT 441
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 681 GGCCGGCAAATACTGGACTCTGATGCCATTAAAGATGACAAGGTGTGGTCAGCACAGCCA 740
Query 442 TTTTCATCTCTGGACCTTGTTCAGCAGAGAAACCCTGACAGAACAAAATTGTATCCAGAA 501
|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 741 TTTTCATCTCTGGACCGTGTTGAGCAGAGAATCCCTGACAGAACAAAATTGTATCCAGAA 800
Query 502 CCACAGGGTCAACCGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT 561
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CCACAACGTCAACTGCATCAAGACCATAATCAACAACAGTTTTCCAGCGAACCAATTCTT 860
Query 562 GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GTCCCGAAGTCATCTTTTGTTTCATACCCTCCTCCAGGCAGCATATCACCAGATCAGCGT 920
Query 622 TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTC 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGGATCGCCAAACTTT 980
Query 682 TCTCCTTTTCCAACTTTGCAGCCTCAGTTGCCTACCATGCATCATGGATCACCGCAGCAT 741
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 981 TCTCCTTTTCCAAATTTGCAGCCTCAGTTGCCTAGCATGCATCATGGATCACCGCAGCAT 1040
Query 742 ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCGCCCTCCAGCTCAA 801
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1041 ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAATCTCCCTCCAGCTCAA 1100
Query 802 TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCTGGGATCATGAATAATGCGATG 861
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1101 TGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGATCATGAATAATGCGATG 1160
Query 862 CTACAACAGCCACCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT 921
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 CTACAACAGCCTCCTCATCAAAACGGTTTGATGCCTCCACAGATGCAGGGCTCTCAGAAT 1220
Query 922 AGGTTACCACATCCGATGCAGCCTTCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA 981
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1221 AGGTTACCACATCCGATGCAGCCTCCTCTCGGGCATATGCCAGGAATGCAGCCTCAGTTA 1280
Query 982 TTTAATTCCCATCTTTCTCGATCATCTTCATCTGGAAATTATGATGGAATGCTTGGGTTT 1041
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1281 TTTAATTCCCATCTTTCTCGATCATCATCCTCTGGAAATTATGATGGAATGCTTGGGTTT 1340
Query 1042 GGTGATCTGAGGGAAGCAAGACCAGGATCAGGTCATGGGAACAGACAGAACATGCGTTTT 1101
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1341 GGTGATCTGAGGGAAGTAAGACCAGGATCAGGTCATGGGAACAGACAGAATGTGCGTTTT 1400
Query 1102 CATCAACAAGGCTTTGATACTGGCATTCAGAGAAGATATCCATTCCGGTCTAAATATATG 1161
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1401 CCCCAACAAGGCTTTGATGCTGGCGTTCAGAGAAGATATCCATTCCGGTCTAAATATATG 1460
Query 1162 TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TCAGCTGGTGAGATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGAT 1520
Query 1222 CCTTACGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA 1281
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 CCTTATGTTGATGATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAA 1580
Query 1282 CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTCCAACAGCGTGCACGGACAAAC 1341
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1581 CTGAAGCATCATTTCTGTCCAAATCATTTGAGGGACCTTCAACAGCGTGCACGGTCGAAC 1640
Query 1342 AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATT 1401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 AACGAGCCCCATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATC 1700
Query 1402 CGCAGGCCTCGTCCTCTTCTTGAAGTGGACCCTCCAAATTCAGCTAAATCTGGTAATGCA 1461
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1701 CGCAGGCCTCGTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGCA 1760
Query 1462 GAGCATA--CC---G-ATAAGCCCCTTGATCAAGAACCGATGCTTGCAGCTAGAGTATAC 1515
||||||| || | ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1761 GAGCATAAACCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTGTAC 1820
Query 1516 ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTC 1575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 ATTGAGGATGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTT 1880
Query 1576 AACCAACTCCAGGACGGAGGAAACCAGTTGaaaaaaaGACGACA-GTCATTGTTGCAGAA 1634
||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||
Sbjct 1881 AACCAACTCCAGGACGGAGGACACCAGTTGAAACAAAGACGACAAG-CATTGTTGCAGAG 1939
Query 1635 CCTTGCGGCTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCGGTCTCA 1694
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1940 CCTTGCGGTTTCACTTCAGCTCGGTGATCCCCTCGCCAAGAATGGGCAAAGCCAGTCTCT 1999
Query 1695 TGATGATTTTCTCTTTCTAAGGATAATCTCTCTTCCAAAGGGTCGGAAGCTACTTATAAG 1754
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 2000 TGATGATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATAAG 2059
Query 1755 GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGTATGGCCATTTT 1814
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2060 GTATCTTCAGCTAATTTTCCCTGGCAGCGACCTAATGCGGATAGTTTGCATGGCCATTTT 2119
Query 1815 CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2120 CCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAACCAC 2179
Query 1875 ATATAAACTTGCAAAAGTTATCAACGTGTGCATTCAAAACATGGAGTTGGGACCGGTAAG 1934
| |||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 2180 AAATAAGCTTGCAACAGTTATCAACTTGTGCATTCAAAACATGGAGTTAGGACCGGTAAG 2239
Query 1935 CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTGGGCAG 1994
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2240 CACGTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCCTTAGGCAG 2299
Query 1995 TCCTGTTGGAGACGGAGCTTCCACGGTACTGAAATCAACACTCGACAGAGCTTCGGAGCT 2054
|||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||
Sbjct 2300 TCCTGTTGGAGACGGAGCTTCCACAGTATTGAAATCAATACTCGACAGAGCTTCCGAGCT 2359
Query 2055 TATTCGGGCTAATAATTTCAACAACGCAGGCATGGCTCTATGGCGCGCTTCCTTTAACGA 2114
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 2360 TATCCGGGCTAATAATTTCAACAACGCAGGGATAGCTCTATGGCGCGCTTCCTTTAATGA 2419
Query 2115 GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT 2174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2420 GTTCTTTAATATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATCATGCAGAGTTT 2479
Query 2175 GAATTCACAATTGCCACCGCAGTTTGCTACTGAGATATCTGATGCAGCTGCAAAAGCCAT 2234
| || | ||||||||||| ||||| |||||||||||||| | |||||||||||||||
Sbjct 2480 G----CA-A-TTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCTGCAAAAGCCAT 2533
Query 2235 TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2534 TGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATTGATGAGCAGCA 2593
Query 2295 AAAGAGAATACTAATGGAGTTTTTGAAAAGATCTATGCTCGGAAGCCAGAAAACCGAGCC 2354
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2594 AAAGAGGATACTGATGGAGTTTTTGAAACGATCTATGCTCGGAAGCCAGAAAACCGAGCC 2653
Query 2355 AGTCTTAAGTTGA 2367
||| |||||||||
Sbjct 2654 AGTATTAAGTTGA 2666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5