BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909562
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79310.1 | Symbols: AtMC7, MC7 | metacaspase 7 | chr1:298339... 1779 0.0
> AT1G79310.1 | Symbols: AtMC7, MC7 | metacaspase 7 | chr1:29833921-29835545
FORWARD LENGTH=1410
Length=1410
Score = 1779 bits (963), Expect = 0.0
Identities = 1132/1213 (93%), Gaps = 14/1213 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAGAGAGCGTTGCTGATAGGAATCAACTACCCAGGCTCCACGGATGAGCTACAA 60
||||| |||||||||||| |||||||||||||||| ||||| ||||||| |||||||||
Sbjct 66 ATGGCAAAGAGAGCGTTGTTGATAGGAATCAACTATCCAGGAACCACGGAGGAGCTACAA 125
Query 61 GGTTGCGTCAACGACGTCCGTCGGATGCATAAGTGCCTCGTTGACCGGTTCGGATTCGCC 120
|| |||||||| ||||||| | | ||||||||||| |||||||||||||||||||||||
Sbjct 126 GGCTGCGTCAATGACGTCCATAGAATGCATAAGTGTCTCGTTGACCGGTTCGGATTCGCG 185
Query 121 GAGAAAGATATCACGGTGCTGATTGACACCGACAAATCTTACACTCAACCCACCGGAAAG 180
||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 186 GAGGAAGATATCACTGTGCTGATTGACACCGACGAATCTTACACTCAACCCACAGGAAAG 245
Query 181 AACATCCGTCAGGCTTTGTCGGAGCTCATAAAGCCAGCAAAGTCCGGTGACGTTTTATTC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 246 AACATCCGTCAGGCTTTGTCGGAGCTCATAAAGCCAGCAAAATCCGGTGACGTTTTATTC 305
Query 241 GTGCATTACAGTGGACACGGTACGAGGGTCCCGCCGGAAACAGAGGAAGAGGATGATACA 300
||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||||||
Sbjct 306 GTGCATTACAGCGGACACGGCACGAGAGTCCCACCGGAAACAGGGGAAGAGGATGATACA 365
Query 301 GGTTTTGATGAGTGTATTGTTCCTTCCGACTTGAATCCAATCCCTGATGATGATTTCAGG 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 366 GGTTTTGATGAGTGTATTGTTCCTTCCGACTTGAATCCAATTCCTGATGATGATTTCAGG 425
Query 361 GATTTGGTGGAACAAGTTCCAGAGGGATGTCAGATAACGATCGTATCAGACTCTTGTCAC 420
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 426 GATTTAGTGGAACAAGTTCCAGAGGGATGTCAGATAACTATCGTATCAGACTCTTGTCAC 485
Query 421 AGCGGCGGACTCATCGATGAAGCTAAGGAACAGATCGGAGAGAGT----------A-CC- 468
|||||||| ||||| |||||||||||||||||||||||||||||| | ||
Sbjct 486 AGCGGCGGGCTCATTGATGAAGCTAAGGAACAGATCGGAGAGAGTACCACGACGAAGCCA 545
Query 469 AATCGAGAAACCAAAGTTTCTTCTTTTGAATTCGAGATTGGGAACTGTTTGCATAGCGTT 528
||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 546 AATCGAGAATCCAAAGTTTCTTCTTTTGAATTCGAGTTTAAAAACTGTTTGCATAGCATT 605
Query 529 TTTGTGAAACTGCTTGCATTTTGTGGAATCGGAAGTTCTCATGTAGAAACGCGCGAGATC 588
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 606 TTTGTGAAACTGCTTGCTTTTTGTGGAATCGGAAGTTCTCATGTAGAGACGCGCGAGATC 665
Query 589 GTAGAAGTAGGGGAGAGAGATGAAGTTGTCAAAGCAAGGTTTCTTCCGTTGGAGAGGTTC 648
||||||||||| ||| ||||||||||||||| | |||||| ||| ||||||||||||||
Sbjct 666 GTAGAAGTAGGCGAGGGAGATGAAGTTGTCAGATCAAGGTATCTGCCGTTGGAGAGGTTT 725
Query 649 A-TCACACTTCTCAAACAACAAACTGGGCAAGACAATATCGAGATTGGGAAAATCAGACC 707
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 ATTGA-ACTTCTCAAACAACAAACTGGGCAAGACAATATCGAGATTGGGAAAATCAGACC 784
Query 708 GACCCTTTTCGATGTCTTTGGCGAAGATTCGAGCCCGAAGATAAAGAAGTTCATGAAAGT 767
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 785 CACCCTTTTTGATGTCTTTGGTGAAGATTCGAGCCCGAAGATAAAGAAGTTCATGAAAGT 844
Query 768 GATTCTCACCAAGCTAAGGAAAAGAAATGATCAAAGTACGTTACTTGGTAAGACCGAAGA 827
|||||| |||||||||||||||| |||||| ||||||||| |||||||||||| ||||||
Sbjct 845 GATTCTTACCAAGCTAAGGAAAACAAATGACCAAAGTACGCTACTTGGTAAGATCGAAGA 904
Query 828 AAGTGCTCGAGGGTATATAGAAGAGAAGATAAACGATGAACACTACATAAAACCCGCAAT 887
|||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 905 AAGTGCTCGAGGGTATATAGAAGAGACGCTGAACGATGAACACTACATGAAACCCGCAAT 964
Query 888 GCAGGCACAAGTGAAGAGCGATCGTGAGATTTATGGAGGAGGATCAAGCAACGGATTGTT 947
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 965 GCAGGCACAAGTGAAGAGCGATCGTGAGATTTATGGAGGAAGATCAAGCAACGGATTGTT 1024
Query 948 TCCCGACCGAGGGATTCTGTTGAGTGGATGTCAAACAGATGAGACATCGGCAGATGTTAA 1007
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1025 TCCTGACCGAGGGATTCTGTTGAGTGGATGTCAAACAGATGAGACATCAGCAGATGTTAA 1084
Query 1008 GAAGAGTGGAGAAGCGTTTGGAGCGTTTAGTAACGCTATCCAAATGGTTTTGTCAGAGAC 1067
||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1085 GAAGAAAGGAGAAGCGTTTGGAGCGTTTAGTAATGCCATCCAAATGGTTTTGTCAGAGAC 1144
Query 1068 TGATCATAAAGATAAGATTACAAACAAAGAAATGGTATTGAGGGCAAGAGAGATTCTGAA 1127
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1145 TGATCATAAAGATAAGATTACAAACAAGGAAATGGTATTGAGGGCAAGAGAGATTCTGAA 1204
Query 1128 GAAACAGAGGTTTATTCAGAGACCAGGATTGTATTGTAATGACCGCTTTGTGAATGCTCC 1187
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1205 GAAACAGATGTTTATTCAGAGACCAGGATTGTATTGCAATGACCGCTTTGTGAATGCTCC 1264
Query 1188 ATTTATATGCTAA 1200
||||||||||||
Sbjct 1265 GTTTATATGCTAA 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5