BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909563
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79320.1 | Symbols: AtMC6, MC6 | metacaspase 6 | chr1:298366... 1186 0.0
> AT1G79320.1 | Symbols: AtMC6, MC6 | metacaspase 6 | chr1:29836686-29837908
FORWARD LENGTH=1107
Length=1107
Score = 1186 bits (642), Expect = 0.0
Identities = 693/718 (97%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGAAAGCTTTACTGATTGGGATCAACTACGTGGGAACCAAGGCAGAGCTACGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCAAGAAAGCTTTACTGATTGGGATCAACTACGTGGGAACCAAGGCAGAGCTACGA 60
Query 61 GGCTGCGTCAACGATGTCCGTCGGATGCGTATAACCCTCGTTGAACGGTACGGATTCTCC 120
||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||
Sbjct 61 GGCTGCGTCAACGATGTCCGTCGGATGCGGATAAGCCTCGTCGAACGGTACGGATTCTCC 120
Query 121 GAG-ACGAACATCAAAATGTTGATTGATACTGATAGTACTTCGATCAAACCGACCGGTAA 179
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GAGGA-GAACATCAAAATGTTGATTGATACTGATAGTTCTTCGATCAAACCGACCGGTAA 179
Query 180 GAACATCAGACAGGCGTTGTTGGATCTCGTTGAACCGGCTAAACCGGGTGACGTTCTCTT 239
||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 180 GAACATCAGACAGGCGTTGTTAGATCTCGTTGAACCGGCTAAATCGGGTGATGTTCTCTT 239
Query 240 CGTCCATTACAGTGGACACGGGACTAGGTTACCCGCTGAAACTGGAGAAGACGATGATAC 299
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 240 CGTCCATTACAGTGGACATGGGACTAGGTTACCCGCGGAAACTGGAGAAGATGATGATAC 299
Query 300 TGGTTACGATGAGTGTATTGTTCCTTCCGATATGAATCTCATCACCGATGATGATTTCAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTACGATGAGTGTATTGTTCCTTCCGATATGAATCTCATCACCGATGATGATTTCAG 359
Query 360 GGATCTTGTAGATATGGTGCCAAAGGATTGTCCCATTACAATCATCTCTGACTCTTGTCA 419
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 360 GGATCTTGTGGATATGGTGCCAAAGGATTGTCCCATCACAATCATATCTGACTCTTGTCA 419
Query 420 CAGTGGTGGTCTCATAGATGAAGCCAAAGAGCAGATAGGAGAGAGCACGAAGAAGAAGAA 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGTGGCGGTCTCATAGATGAAGCCAAAGAGCAGATAGGAGAGAGCACGAAGAAGAAGAA 479
Query 480 AGACTATGGAGACTCTTCAGCGATCAACAAGGAGACAGAAGCAGAGATAATTGAAGTGGG 539
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGACTCTGGAGACTCTTCAACGATCAACAAGGAGACAGAAGCAGAGATAATTGAAGTGGG 539
Query 540 AAAAAGGTCTCTGCCATTGGATACTTTGATTGATATGCTGAAGCAAGAGACGGGCAACGA 599
||| || |||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 540 AAACAGATCTCTGCCATTGGAGACTTTGATTGATATGCTGAAGCAAGAAACAGGCAACGA 599
Query 600 TGATATCGAAGTGGGGAAAATCAGGACAACCCTTTTCGATATGTTTGGAGAAGATTCAAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TGATATCGAAGTGGGGAAAATCAGGACAACCCTTTTCGATATGTTTGGAGATGATTCAAG 659
Query 660 TCCAAAGGTGAAGAAGTTCATGAATGTGATTCTAAGCAACCTACAAGAGACTACTACT 717
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCAAAGGTGAAGAAGTTTATGAATGTGATTCTAAGCAACCTACAAGAGACTACTACT 717
Score = 575 bits (311), Expect = 3e-163
Identities = 333/344 (97%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 731 TAGCTCAAGAGTTTCTTGAGCAGAAGCTTAACGACGATGTGAAACCCACGATCCAAGAGG 790
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 764 TAGCTCAAGAGTTTCTGGAGCAGAAGCTTAGCGACGATGTGAAACCCGCGATCCAAGATG 823
Query 791 TGTATGCAGGTGCTATCAATGGTGCACTTCCTGATAACGGTATACTGATCAGTGGTTGCC 850
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 824 TGTATGCAGGTGCTATAAATGGTGCACTTCCTGATAATGGTATACTGATCAGTGGTTGCC 883
Query 851 AAACTGATCAAACTTCTGCAGACGCAAGCCCACCGGGTCACCCGGAATTGGCTTATGGAG 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AAACTGATCAAACTTCTTCAGACGCAAGCCCACCGGGTCACCCGGAATTGGCTTATGGAG 943
Query 911 CACTAACCAATGCTATACAGATTATAATTGGGGAAACTAAAGGTAAGATTAGTAACAAAG 970
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 944 CACTAACCAATGCTATACAGATTATAATTGGGGAGACTAAAGGTAAGATTAGTAACAAAG 1003
Query 971 ATCTTGTTTTGAAGGCTAGGAAGCTTCTTAAGAAACAGGGCTTTGATCAACGACCGGGAC 1030
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1004 ATCTTGTTTTGAAGGCTAGGAAGCTTCTTAGGAAACAGGGCTTTGATCAACGACCGGGAC 1063
Query 1031 TGTATTGCAATGATACTTATGTCAATGCTCAGTTTATATGTTGA 1074
|||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1064 TGTATTGCAATGATGCTTATGTCAATGCTCGGTTTATATGTTGA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5