BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909573
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79420.1 | Symbols: | Protein of unknown function (DUF620) ... 1496 0.0
> AT1G79420.1 | Symbols: | Protein of unknown function (DUF620)
| chr1:29871458-29874315 FORWARD LENGTH=1482
Length=1482
Score = 1496 bits (810), Expect = 0.0
Identities = 870/900 (97%), Gaps = 0/900 (0%)
Strand=Plus/Plus
Query 325 GAGACGTCGACAGCGCATTATATAATACAGCAATACTTAGCGGCAACGGGATGTCTAAAG 384
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 434 GAGACGTCGACAGCGCATTATATAATACAACAATACTTAGCGGCGACGGGATGTCTAAAG 493
Query 385 AGAGCGAAAGCGGCGAAGAACATGTACGCGACGGGGATAATGAAAATGAGTTGCTGTGAG 444
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CGAGCGAAGGCGGCGAAAAACATGTACGCGACGGGGATAATGAAAATGAGTTGCTGTGAG 553
Query 445 ACGGAGATCGCCGCCGGAAAAAGCGTGAAGACACTAGGCGGTGGTGGAAACGGTAGGAGC 504
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 554 ACGGAGATAGCCGCCGGAAAAAGTGTGAAGACACTAGGCGGTGGTGGAAACGGTAGGAGC 613
Query 505 GGAGATAGTGGTTGCTTCGTGTTGTGGCAGATGCAGCCTGGAATGTGGTCTCTCGAACTT 564
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 614 GGAGATAGTGGTTGCTTCGTGCTGTGGCAGATGCAGCCTGGAATGTGGTCTCTGGAGCTT 673
Query 565 GTTCTCGGTGGCACTAAACTCATCTCCGGCTCCGACGGTAAAACCGTTTGGCGCCATACG 624
||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 674 GTTCTCGGTGGAACTAAACTCATCTCTGGCTCGGACGGTAAAACAGTTTGGCGCCATACG 733
Query 625 CCATGGCTCGGTACTCACGCCGCTAAAGGCCCTCAACGTCCACTTCGCCGTCTAATCCAG 684
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 734 CCATGGCTCGGTACTCACGCCGCTAAAGGCCCTCAACGTCCACTTCGTCGTCTAATCCAG 793
Query 685 GGCTTGGACCCAAAAACCACAGCAAGCCTATTCGCAAAGGCCCAATGCTTAGGCGAACGA 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GGCTTGGACCCAAAAACCACAGCAAGCCTATTCGCAAAGGCCCAATGCTTAGGCGAACGA 853
Query 745 AGAATCGGCGACGATGACTGTTTCGTGCTCAAAGTCTCCGCCGATCGTGACTCCTTGTTA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 854 AGAATCGGCGACGATGACTGTTTCGTGCTCAAAGTCTCCGCCGATCGTGACTCGTTGTTA 913
Query 805 GAACGGAATGACGCCGGAGCTCCGGCGGAGGTTATACGCCACGCACTGTACGGATATTTC 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 GAACGGAATGACGCCGGAGCTCCGGCGGAGGTTATACGCCACGCACTGTACGGATACTTC 973
Query 865 TGTCAGAAAAGCGGTCTCTTAGTCTATTTAGAGGATTCACACCTCACTAGGGTTATGACG 924
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 974 TGTCAGAAAAGCGGTCTATTAGTCTATTTAGAGGATTCGCACCTCACTAGGGTTATGACG 1033
Query 925 ATCTCGCCTGAGGACGAGGCGGTTTACTGGGAGACGACAATCGGAACTAGCATCGGAGAT 984
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1034 ATCTCGCCTGAGGACGAGGCGGTTTACTGGGAGACGACGATCGGAACAAGCATCGGAGAT 1093
Query 985 TACCGTGATGTTGACGGAGTAGCCGTCGCGCATTGTGGTCGCGCCGTCGCGACGGTGTTT 1044
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1094 TACCGTGACGTTGACGGAGTAGCCGTCGCGCATTGTGGTCGTGCCGTCGCGACGGTGTTC 1153
Query 1045 CGATTTGGGGAGACGTCGTTGCAGTATAGCAGAACGAGGATGGAGGAGATTTGGAGGATA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CGATTTGGGGAGACGTCGTTGCAGTATAGCAGAACGAGGATGGAGGAGATTTGGAGGATA 1213
Query 1105 GACGACGTCGTTTTCGATGTGCCTGGCCTCTCTTTGGACTCCTTTATTCCTCCCGCCGAT 1164
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1214 GACGACGTCGTTTTCGATGTGCCTGGTCTCTCTTTGGACTCCTTTATTCCTCCCGCCGAT 1273
Query 1165 ATTTTTGAAGATACTAACCCTAATAATAATAATATTTACAGCAATGTCAATTCCCGATGA 1224
|| |||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||
Sbjct 1274 ATATTTGAAGATACTAACCCTAACAATAATAATATTTACAGTATTGTTAATTCCCGATGA 1333
Score = 551 bits (298), Expect = 6e-156
Identities = 317/326 (97%), Gaps = 1/326 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAACTCAAAATCATACTGGAGAAAGCAAAGATGGGGAACGCCGCCGCAAGCCCTA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 80 ATGAGCAACTCAAAGTCATACTGGAGAAAGCAAAGATGGGGAACGCCGCCACAAGCCCTA 139
Query 61 ACACCGTTAATGGAAGGGCCAGATCCAGACATGCAAGACGAAAGAACCAAGAAGGAGAGC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ACACCGTTAATGGAAGGACCAGATCCAGACATGCAAGACGAAAGAACCAAGAAGGAGAGC 199
Query 121 TCATGGGAAGCGATTAGAGAATGGTTTAAGGTTCATAAGGGCATTTCTGGAAATATGTCA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TCATGGGAAGCAATTAGAGAATGGTTTAAGGTTCATAAGGGCATTTCTGGAAATATGTCA 259
Query 181 TCTCCTTCGGTCCAACCACTTTGCAACAGCTATGACGTGCCGGCAAAGGGACAAGACTTG 240
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 260 TCTCCTTCGGTCCAACCACTTTGCAACAGCTATGACGTGCCAGCTAAGGGACAAGACTTG 319
Query 241 AGGCTCTTGCTCGGCGTCTTGGGTTGTCCTCTTGCTCCAATCTCCGTTGTCGTCTATGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 320 AGGCTCTTGCTCGGCGTCTTGGGTTGTCCTCTTGCTCCAATCTCCGTTGTCGTCTCTGAC 379
Query 301 -TATTTTCCGATGACCCTCTTCTTGG 325
||||| |||||||||||||||||||
Sbjct 380 CTATTTCCCGATGACCCTCTTCTTGG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5