BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909580
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79500.5 | Symbols: AtkdsA1 | Aldolase-type TIM barrel famil... 1354 0.0
AT1G16340.4 | Symbols: ATKDSA2 | Aldolase superfamily protein |... 979 0.0
> AT1G79500.5 | Symbols: AtkdsA1 | Aldolase-type TIM barrel family
protein | chr1:29903420-29909437 FORWARD LENGTH=2194
Length=2194
Score = 1354 bits (733), Expect = 0.0
Identities = 767/784 (98%), Gaps = 0/784 (0%)
Strand=Plus/Plus
Query 34 AAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAATGTGATCGAATCCGAGGAACAT 93
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 65 AAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAATGTGATTGAATCCGAGGAACAT 124
Query 94 ATTCTTCGAATGGCAAAGCACATTAAAGACATTGCCACAAAAGTTGGGCTGCCTCTGGTC 153
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 125 ATTCTTCGAATGGCAAAGCACATTAAAGACATTTCCACAAAAGTTGGGCTGCCCCTGGTT 184
Query 154 TTCAAGTCAAGTTTTGATAAAGCTAACAGAACTTCTTCAAAGTCATTTCGAGGTCCTGGC 213
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 185 TTCAAGTCAAGTTTTGATAAAGCTAACAGAACTTCTTCAAAGTCATTTCGTGGTCCTGGC 244
Query 214 ATGGCCGAGGGTCTGAAGATTCTTGAGAAGGTGAAAGTAGCATATGATCTTCCAATAGTT 273
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 245 ATGGCCGAGGGTCTGAAGATTCTTGAGAAGGTGAAGGTAGCATATGATCTACCAATAGTA 304
Query 274 ACTGATGTTCACGAATCAAGCCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAG 333
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ACTGATGTTCATGAATCAAGCCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAG 364
Query 334 ATTCCAGCATTCTTATGTCGCCAGACAGATCTTCTGGTTGCAGCAGCACACACCGGAAAA 393
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 365 ATTCCAGCATTCTTATGTCGCCAGACAGATCTTCTGGTTGCAGCAGCACAAACCGGAAAA 424
Query 394 ATTATCAATATTAAGAAAGGACAATTCTGTGCTCCTTCTGTCATGGAAAATTCAGCCGAG 453
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 425 ATTATCAATATTAAGAAAGGACAATTCTGTGCTCCTTCTGTCATGGAGAATTCAGCTGAG 484
Query 454 AAGATCAGACTGGCTGGGAATCCAAATGTTATGGTTTGTGAAAGAGGAACCATGTTCGGA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AAGATCAGACTGGCTGGGAATCCAAATGTTATGGTTTGTGAAAGAGGAACCATGTTCGGA 544
Query 514 TACAATGATTTGATAGTAGATCCACGAAACTTTGAGTGGATGAGGGAAGCTAATTGTCCT 573
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 545 TACAATGATTTGATAGTAGATCCACGAAACTTCGAGTGGATGAGAGAAGCTAATTGTCCT 604
Query 574 GTTGTCGCTGATATAACCCATTCACTACAACAACCTGCAGGCAAGAAGTTGGATGGTGGT 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GTTGTCGCTGATATAACCCATTCACTACAACAACCTGCAGGCAAGAAGTTGGATGGTGGT 664
Query 634 GGTGTTGCTAGTGGTGGCCTTCGCGAGTTAATACCATGCATTGCAAGAACAGCTGTAGCA 693
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GGTGTTGCAAGTGGAGGCCTTCGCGAGTTAATACCATGCATTGCAAGAACAGCTGTAGCA 724
Query 694 GTTGGCGTCGATGGAATTTTCATGGAGGTTCATGATGATCCTCTAAGTGCTCCGGTTGAT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 725 GTTGGCGTCGATGGAATTTTCATGGAGGTTCATGATGATCCTCTAAGTGCTCCAGTTGAT 784
Query 754 GGTCCAACTCAATGGCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGTCCAACTCAATGGCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATT 844
Query 814 GCGA 817
||||
Sbjct 845 GCGA 848
Score = 97.1 bits (52), Expect = 2e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 816 GAGGGTCACAAAAGGGAAGCAGCGGCTCCAAATCGACCTTACACCCTACCGTGATTAA 873
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 870 GAGGGTTACAAAAGGGAAGCAGCGGCTTCAAATCGACCTTACACCCTACCGTGATTAA 927
> AT1G16340.4 | Symbols: ATKDSA2 | Aldolase superfamily protein
| chr1:5587790-5590642 REVERSE LENGTH=1297
Length=1297
Score = 979 bits (530), Expect = 0.0
Identities = 760/871 (87%), Gaps = 16/871 (2%)
Strand=Plus/Plus
Query 13 TCACCACTGTACAATCAGCTCAAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAAT 72
|||| |||||| |||||||||||| |||||| || || ||||| |||||||||||||||
Sbjct 189 TCACTACTGTATGATCAGCTCAAGGTTGCTGAGCCGTTTTTCTTATTGGCTGGTCCAAAT 248
Query 73 GTGATCGAATCCGAGGAACATATTCTTCGAATGGC--AAAGCACATTAAAGACATTGCCA 130
|||||||||||||| || ||| ||||||| ||||| |||| ||| ||||| ||| | |
Sbjct 249 GTGATCGAATCCGAAGAGCATGTTCTTCGTATGGCTAAAAG--CATCAAAGATATTTCGA 306
Query 131 CAAA--A---G-TTGGGCTGCCTCTGGTCTTCAAGTCAAGTTTTGATAAAGCTAACAGAA 184
|||| | | ||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 307 CAAAGTATGTGCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGATAAAGCTAACAGAA 366
Query 185 CTTCTTCAAAGTCATTTCGAGGTCCTGGCATGGCCGAGGGTCTGAAGATTCTTGAGAAGG 244
|||| |||||||| || ||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 367 CTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGATTCTTGAGAAGG 426
Query 245 TGAAAGTAGCATATGATCTTCCAATAGTTACTGATGTTCACGAATCAAGCCAGTGTGAAG 304
|||||||||||| |||||| ||||| |||||||| ||||| || || || ||||||||||
Sbjct 427 TGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTTCATGAGTCGAGTCAGTGTGAAG 486
Query 305 CAGTTGGCAAGGTTGCAGATATAATTCAGATTCCAGCATTCTTATGTCGCCAGACAGATC 364
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 487 CAGTTGGCAAGGTTGCAGATATAATTCAGATACCGGCGTTCTTATGTCGACAGACAGATC 546
Query 365 TTCTGGTTGCAGCAGCACACACCGGAAAAATTATCAATATTAAGAAAGGACAATTCTGTG 424
||||||| || ||||| || | || ||||||||||| || |||||||||||||| ||||
Sbjct 547 TTCTGGTCGCGGCAGCCCAAAGTGGGAAAATTATCAACATAAAGAAAGGACAATTTTGTG 606
Query 425 CTC-CTTCTGTCATG-GAAAATTCAGCCGAGAAGATCAGACTGGCTGGGAATCCAAATGT 482
|| || |||||||| |||| | | || |||||| | ||||| || ||||||||||||||
Sbjct 607 GTCACT-CTGTCATGAGAAACT-CGGCTGAGAAGGTTAGACTCGCAGGGAATCCAAATGT 664
Query 483 TATGGTTTGTGAAAGAGGAACCATGTTCGGATACAATGATTTGATAGTAGATCCACGAAA 542
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 665 GATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTAGATCCACGAAA 724
Query 543 CTTTG-AGTGGATGAGGGAAGCTAATTGTCCTGTTGTCGCTGATATAACCCATTCACTAC 601
|||| | ||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct 725 -TTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACTCATTCATTAC 783
Query 602 AACAACCTGCAGGCAAGAAGTTGGATGGTGGTGGTGTTGCTAGTGGTGGCCTTCGCGAGT 661
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 784 AACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGTGGCCTTCGCGAAT 843
Query 662 TAATACCATGCATTGCAAGAACAGCTGTAGCAGTTGGCGTCGATGGAATTTTCATGGAGG 721
||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 844 TAATACCATGCATAGCAAGAACCGCCGTAGCTGTTGGTGTCGATGGAATTTTCATGGAGG 903
Query 722 TTCATGATGATCCTCTAAGTGCTCCGGTTGATGGTCCAACTCAATGGCCTTTGCGCCATC 781
| |||||||||||| ||| ||| ||||| ||||||||||| ||||||||| |||| ||||
Sbjct 904 TGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGCCTCTGCGTCATC 963
Query 782 TAGAAGAACTCCTGGAAGAGCTCATTGCGATTGCGAGGGTCACAAAAGGGAAGCAGCGGC 841
|||||||||| || |||||||||||||| || ||||| |||||||| ||||| || | |
Sbjct 964 TAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGGAAACAACAGT 1023
Query 842 TCCAAATCGACCTTACACCCTACCGTGATTA 872
|||||||||| || || || || ||||||||
Sbjct 1024 TCCAAATCGATCTCACGCCTTATCGTGATTA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5