BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909584

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14950.1 | Symbols: GMII, ATGMII | golgi alpha-mannosidase I...   647    0.0  


> AT5G14950.1 | Symbols: GMII, ATGMII | golgi alpha-mannosidase 
II | chr5:4837152-4841942 REVERSE LENGTH=4004
Length=4004

 Score =  647 bits (350),  Expect = 0.0
 Identities = 385/402 (96%), Gaps = 2/402 (0%)
 Strand=Plus/Plus

Query  86   TCGCACTCATGGTCTCACTCCTCTTCTTCCTCCTCACTCTCTTCCATTTCGGCGTACCAG  145
            |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  326  TCGCACTCACCGTCTCACTCCTCTTCTTCCTCCTCACTCTCTTCCACTTCGGCGTACCAG  385

Query  146  GACCGATCTCCTCACGATTCCTCACCTCCAGATCCAATCGGATCGTGAAGCCACGGAAGA  205
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  386  GACCGATCTCCTCACGATTCCTTACCTCCAGATCCAATCGGATCGTCAAGCCACGGAAGA  445

Query  206  ATATCAATCGCCGACCATTAAACGATTCCAATTCCGGCGCCGTCGTTGATATCACGACTA  265
            |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  446  ATATTAATCGCCGACCCTTAAACGATTCCAATTCAGGCGCCGTCGTTGATATCACAACTA  505

Query  266  AAGATCTATACGATAGGATTGAGTTTCTTGATGCAGATGGTGGTCCATGGAAACAAGGTT  325
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  506  AAGATCTATACGATAGGATTGAGTTTCTTGATACAGATGGTGGTCCATGGAAACAAGGTT  565

Query  326  GGAGAGTTACGTATAAAGGA-GATGAGTGGGAGAAGGAGAAGCTCAAAATCTTCGTTGTG  384
            |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| 
Sbjct  566  GGAGAGTTACGTATAAAG-ACGATGAGTGGGAGAAAGAGAAGCTCAAAATCTTCGTTGTT  624

Query  385  CCTCATTCTCATAACGATCCTGGTTGGAAATTGACGGTGGAGGAGTATTATCAGAGACAA  444
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  625  CCTCATTCTCATAACGATCCTGGTTGGAAATTGACTGTAGAGGAGTATTATCAGAGACAA  684

Query  445  TCCAGGCATATTCTTGACACCATTGTTGAGACTTTATCTAAG  486
            ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  685  TCCAGACATATTCTTGACACCATTGTTGAGACTTTATCTAAG  726



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5