BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909593

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79580.1 | Symbols: SMB, ANAC033 | NAC (No Apical Meristem) ...   167    4e-41


> AT1G79580.1 | Symbols: SMB, ANAC033 | NAC (No Apical Meristem) 
domain transcriptional regulator superfamily protein | chr1:29940896-29943442 
REVERSE LENGTH=1534
Length=1534

 Score =  167 bits (90),  Expect = 4e-41
 Identities = 121/134 (90%), Gaps = 9/134 (7%)
 Strand=Plus/Minus

Query  1    ATGAAGGTGCTG---A-TGAACGATCTTTGTCTGCTTCTTAAACAAGAGAGGTTTGATGA  56
            ||||||||||||   | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  166  ATGAAGGTGCTGCAAACTGAACGATCTTTGTCTGCTTCTTAAACAAGAGAGGTTTAATGA  107

Query  57   TAGAGACTTAGTCATGCTCTTAACTAGTAATCAAAGAGAAGAAATTAAAATAGAGAGATG  116
            |||||||||||||||| ||||||   ||||||||||| ||||||| ||||||||||||||
Sbjct  106  TAGAGACTTAGTCATGTTCTTAA---GTAATCAAAGAAAAGAAATGAAAATAGAGAGATG  50

Query  117  TTTGAAG-CGAAAA  129
            ||| ||| ||||||
Sbjct  49   TTT-AAGACGAAAA  37



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5