BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909597
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58060.1 | Symbols: | Cation efflux family protein | chr3:2... 1160 0.0
> AT3G58060.1 | Symbols: | Cation efflux family protein | chr3:21497778-21499676
REVERSE LENGTH=1236
Length=1236
Score = 1160 bits (628), Expect = 0.0
Identities = 989/1159 (85%), Gaps = 41/1159 (4%)
Strand=Plus/Plus
Query 1 ATGAAATCGAAATTCCTT-ACGGATTTGCCACAAAAACTTCGTTCCAAAATCGATCCGGA 59
||||||||| |||| ||| |||||||||| ||||||||||| || ||||||||||| ||
Sbjct 97 ATGAAATCG-AATTTCTTCGCGGATTTGCCTCAAAAACTTCGATCAAAAATCGATCCCGA 155
Query 60 GAACCCTTTGCACCTTGATGTCGCCAAAACCGTAGGCCTCAAAAGAGGCAAGTATCAAAG 119
|||||||||||||||||||||| ||||| | | ||||||| || | | ||| |
Sbjct 156 GAACCCTTTGCACCTTGATGTCTCCAAAGCTGCAGGCCTC--AA-A-G-AAG------A- 203
Query 120 TGAAAAGGAGTACTACGAAAAACAGTTGGCAACCCTCCAATCATTTGAAGATGTAGAAAG 179
|||||||||||||||||||| ||| |||||||| || |||| |||||||| ||||||||
Sbjct 204 TGAAAAGGAGTACTACGAAAGACAATTGGCAACACTAAAATCCTTTGAAGAAGTAGAAAG 263
Query 180 TTTCTTAGCTCGACCAGATGAGTATACCATCGAT-------AAGAAGAAGAAGATCGAGC 232
||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 264 TTTCTTAGCTCGATCAGATGAGTATACCATCGATGAAAAAGAAGAAGAAGAAGATCGAGC 323
Query 233 TGAGAGAGCTGCACAAGAGTTTGCCATGCAAATCTCCAATTGGGCTAACATCTTTTTACT 292
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 324 TGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCAAATTGGGCTAACATCTTTTTACT 383
Query 293 TGCTCTCAAGGTGTATATATGCTACGATAAAGAGTGGATCCATAGCAATTAG-AGCATCA 351
|||||||||| |||||||||||| |||||||||||||||| || ||| | ||||||
Sbjct 384 TGCTCTCAAG----ATATATGCTACGGTAAAGAGTGGATCCATTGCGATT-GCAGCATCT 438
Query 352 ACACTAGACTCTTTGCTTGATCTAATGGCTGGAGGAATTCTATGGTTCACGCATGTGGCT 411
||||| ||||| |||||||| || ||||| |||||||| || |||||||| ||| || ||
Sbjct 439 ACACTCGACTCATTGCTTGACCTTATGGCGGGAGGAATACTTTGGTTCACACATTTGTCT 498
Query 412 ATGAAGAACTTTAATATCTACAAATATCCCATTGGAAAGCTTAGGGTACAACCTGTTGGA 471
||||||||| | ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 499 ATGAAGAACGTAAATATCTACAAATATCCTATAGGAAAGCTTAGGGTGCAACCTGTTGGA 558
Query 472 ATCATTATCTTCGCCGCTGTTATGGCCACTCTTGGATTCCAATTGCTTCTTGTGGCAGCT 531
||||| || ||||||||||||||||| || ||||| |||||| |||| ||||||||||||
Sbjct 559 ATCATCATTTTCGCCGCTGTTATGGCTACCCTTGGGTTCCAAGTGCTGCTTGTGGCAGCT 618
Query 532 GAACAATT-ATTTACAAATGTACCTTCAGAAAAAATGAATCATGACCAATTG-TGTTGGT 589
|| ||||| |||| |||||| ||||||||| ||||||||||||| ||||||| | |||||
Sbjct 619 GAGCAATTGATTT-CAAATGAACCTTCAGAGAAAATGAATCATGTCCAATTGAT-TTGGT 676
Query 590 TATATTCAATCATGCTAAGTGCAACCGCTATTAAACTCGTCCTATGGATATACTGTAAAA 649
| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 677 TGTATTCAATCATGCTAAGCGCAACCGCTATTAAACTCGTCTTATGGATCTACTGCAAAA 736
Query 650 GCTCAAGAAATCATATTGTTCGCGTATACGCAAAGGATCATCAGTTTGATGTGGTGACAA 709
|||| ||||| ||||| || || | ||| |||||||||||||| ||||||||||| ||||
Sbjct 737 GCTCGAGAAACCATATAGTCCGTGCATATGCAAAGGATCATCACTTTGATGTGGTAACAA 796
Query 710 ATATTCTTGGATTGGTCGCTGCTGTTCTTGGGAATGCCTTGTATTGGTGGATTGATCCAT 769
|| ||||||||||||| || || ||||||| ||||| || || |||||| | ||||||
Sbjct 797 ATGTTCTTGGATTGGTTGCGGCCGTTCTTGCTAATGCTTTTTACTGGTGGCTCGATCCAA 856
Query 770 CTGGTGCTATTCTCTTAGCAATCTACACTATAATCAATTGGTCTGGGACCGTTATAGAAA 829
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||
Sbjct 857 CTGGTGCTATTCTCTTAGCCATCTACACTATTGTCAATTGGTCTGGGACTGTTATGGAAA 916
Query 830 ATGCAGTCTCGTTGATAGGACAATCAGCTCCTCCGGAAGTATTGCAAAAGCTT-ACGTAC 888
||||||| || ||||| ||||||||||||||||| |||||| | |||||| || || |||
Sbjct 917 ATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTACAAAAG-TTGACATAC 975
Query 889 CTAGTGTTACGACAAGGAGTG-GATAACAAT-AAACATGTGGACACTATTCGTGCATATA 946
|||||| | |||||||| | | ||||| | | ||||||||||| || | ||||||||||
Sbjct 976 CTAGTGATGCGACAAGGCG-GCGATAATA-TCAAACATGTGGATACCGTCCGTGCATATA 1033
Query 947 GCCTT-GGCGTTCTGTACTTTGTCGAGGTGGATATAGAGCTTCCAGAGGATATGTCATTG 1005
|||| || ||||| || |||||||||||||||||||| || ||||||||| || |||||
Sbjct 1034 -CCTTCGGTGTTCTTTATTTTGTCGAGGTGGATATAGAACTGCCAGAGGATTTGCCATTG 1092
Query 1006 AAGGAAGCTCATGAGATTGGTGAGGCAATGCAGATCAAGCTTGAAGACCTTCCAGAAGTT 1065
|| |||||||||| ||||||||| || |||| || ||||||||||| ||||| || ||
Sbjct 1093 AAAGAAGCTCATGCGATTGGTGAATCATTGCAAATAAAGCTTGAAGAACTTCCTGAGGTG 1152
Query 1066 GAAAGAGCTTTCGTACATATCGACTTTGAGTGCCGTCATAAGCCTGAGCACTCTGTTCGT 1125
||||||||||| || ||| | || |||||||| | ||| |||||||| || || || | |
Sbjct 1153 GAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAACATTCCGTCCTT 1212
Query 1126 T-TAACAATTCCAAACGAT 1143
| || |||| || ||||||
Sbjct 1213 TCTA-CAATCCCCAACGAT 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5