BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909600
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79610.1 | Symbols: ATNHX6, NHX6 | Na+/H+ antiporter 6 | chr... 2756 0.0
> AT1G79610.1 | Symbols: ATNHX6, NHX6 | Na+/H+ antiporter 6 | chr1:29952873-29957189
REVERSE LENGTH=1943
Length=1943
Score = 2756 bits (1492), Expect = 0.0
Identities = 1573/1612 (98%), Gaps = 5/1612 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTCGGAGCTGCAGATTTCGCCGGCGATTCACGACCCGCAAGGTCAAGAGAAGCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGTCGTCGGAGCTGCAGATTTCGCCGGCGATTCACGACCCGCAAGGTCAAGAGAAGCAG 179
Query 61 CAGCAAGCCGCCGGAGTCGGGATTTTGCTTCAGATCATGATGCTCGTCCTCTCTTTTGTA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 CAGCAAGCCGCCGGAGTCGGGATTTTGCTTCAGATCATGATGCTTGTCCTCTCTTTTGTA 239
Query 121 CTCGGTCATGTCCTTCGCCGTCATAAGTTCTATTACCTACCTGAAGCTAGTGCTTCTCTT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 CTCGGTCATGTCCTTCGCCGTCATAAGTTCTATTATCTACCTGAAGCTAGTGCTTCTCTT 299
Query 181 CTAATCGGGCTGATCGTTGGTGGTTTAGCGAACATCTCGAACACGGAGACTAGCATAAGG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAATTGGGCTGATCGTTGGTGGTTTAGCGAACATCTCGAACACGGAGACTAGCATAAGG 359
Query 241 ACATGGTTCAATTTCCACGACGAGTTCTTCTTTCTGTTTCTGCTGCCTCCCATCATATTC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACATGGTTCAATTTCCACGATGAGTTCTTCTTTCTGTTTCTGCTGCCTCCCATCATATTC 419
Query 301 CAGTCAGGCTTCAGCCTACAACCTAAACCTTTCTTTTCAAACTTTGGAGCCATTGTCACT 360
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 CAGTCAGGCTTCAGTTTACAACCTAAACCTTTCTTCTCAAACTTTGGAGCCATTGTCACT 479
Query 361 TTTTCAGTTCTTGGAACTTTTGTAGCTTCCATGGTTACTGGAGTGCTAGTGTACCTTGGC 420
|||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 480 TTTTCAGTGCTTGGAACTTTTGTAGCTTCCATGGTTACTGGATTGCTTGTGTACCTTGGC 539
Query 421 GGTGTGATGTTTCTCATGTACAGACTTCCATTCGTTGAGTGTCTCATGTTTGGCTCTCTT 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 GGTGTGATGTTTCTCATGTACAGACTTCCATTCGTCGAGTGTCTCATGTTTGGCTCTCTT 599
Query 481 ATCTCAGCCACTGATCCTGTCACTGTATTGTCGATATTTCAGGAACTTGGTTCTGATGTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 ATCTCAGCCACTGATCCTGTCACTGTATTGTCGATATTTCAGGAACTTGGTTCAGATGTA 659
Query 541 AATTTGTATGCCTTGGTGTTTGGAGAATCAGTTTTAAATGATGCTATGGCGATATCTCTG 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATTTGTATGCCCTGGTGTTTGGAGAATCAGTTTTAAATGATGCTATGGCGATATCTCTG 719
Query 601 TACAGGACAATGTCCTTGGTGAGAAGTCATTCCTCCGGACAGAATTTCTTTATGGTGATA 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 TACAGGACAATGTCCTTGGTGAGAAGTCATTCCTCTGGACAGAATTTCTTTATGGTGATA 779
Query 661 GTCAGGTTTCTCGAAACGTTTGTCGGTTCAATGTCTGCAGGCGTTGGAGTTGGATTCACC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTCAGGTTTCTCGAAACGTTTGTCGGTTCAATGTCTGCAGGCGTTGGAGTTGGATTCACC 839
Query 721 TCTGCTCTACACCTATTCAAGTATGCAGGACTGGATGTTGACAATCTACAGAACTTGGAG 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTGCTCT---CCTATTCAAGTATGCAGGACTGGATGTTGACAATCTACAGAACTTGGAG 896
Query 781 TGCTGTCTCTTCGTGCTTTTTCCATATTTCTCATACATGCTTGCTGAAGGTCTCAGTCTA 840
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 897 TGCTGTCTCTTCGTACTTTTTCCATATTTCTCTTACATGCTTGCTGAAGGTCTCAGTCTA 956
Query 841 TCTGGCATCGTATCGATTCTATTTACAGGGATTGTCATGAAACATTATACCTACTCAAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCTGGCATCGTATCGATTCTATTTACAGGGATTGTCATGAAACATTATACCTACTCAAAC 1016
Query 901 TTGTCTGCAAATTCTCAGCGATTTGTGTCTGCATTTTTCCATCTGATATCTTCACTGGCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTGTCTGCAAATTCTCAGCGATTTGTGTCTGCATTTTTCCATCTGATATCTTCACTGGCA 1076
Query 961 GAGACTTTTGTGTTCATCTACATGGGTTTTGATATTGCCATGGAAAAGCATAGTTGGTCA 1020
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAGACATTTGTGTTCATCTACATGGGTTTTGATATTGCCATGGAAAAGCATAGTTGGTCA 1136
Query 1021 CACTTGGGATTCATCTTATTCTCTATTTTATTTATAGTAATAGCAAGGGCAGCTAATGTG 1080
|||||||||||||| || || |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1137 CACTTGGGATTCATATTTTTTTCTATTTTATTTATCGTAATTGCAAGGGCAGCTAATGTG 1196
Query 1081 TTTGGTTGTGGATATTTGATCAATCTGGCACGACCTGCTCATAGGAAAATACCAATGACG 1140
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTTGGTTGTGGATATTTGGTCAATCTGGCACGACCTGCTCATAGGAAAATACCAATGACA 1256
Query 1141 CATCAAAAAGCACTTTGGTACAGTGGACTTCGAGGTGCTATGGCTTTTGCTCTTGCTCTA 1200
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1257 CATCAAAAAGCACTTTGGTACAGTGGACTTCGAGGTGCTATGGCATTTGCTCTTGCTCTG 1316
Query 1201 CAATCTGTTCACGATCTCCCAGAAGGACATGGTCAAACTATATTTACTGCAACTACAGCC 1260
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1317 CAATCTGTTCACGATCTTCCAGAAGGACATGGTCAAACTATATTCACTGCAACTACAGCC 1376
Query 1261 ATTGTTGTTCTGACGGTGTTGCTGATTGGAGGATCCACTGGTACAATGCTTGAAGCCCTA 1320
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1377 ATTGTTGTTCTGACGGTGTTGCTGATTGGAGGATCGACTGGTACAATGCTAGAAGCCCTA 1436
Query 1321 GAGGTTGTAGGTGATAGCCACGATACATCCTTAGGTGATGGCTTTGAGGTGGTGAACAGT 1380
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 GAGGTTGTAGGTGATAGCCACGATACATCCTTAGGTGATGGATTTGAGGTGGTGAACAGT 1496
Query 1381 CGTTATATGACTAGTTATGATGATGAAGATACACCGCCAGGAAGTGGATTCAGGACAAAA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CGTTATATGACTAGTTATGATGATGAAGATACACCGCCAGGAAGTGGATTCAGGACAAAA 1556
Query 1441 CTAAGAGAGTTCCATAAGAGTGCGGCATCATTCACAGAACTAGATAGGAATTACCTAACA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTAAGAGAGTTCCATAAGAGTGCGGCATCATTCACAGAACTAGATAGGAATTACCTAACA 1616
Query 1501 CCGTTCTTCACAAGTAACAACGGAGATTATGATGATGAGGGTAACATTGAGCAACACCAT 1560
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1617 CCGTTCTTCACAAGTAACAACGGAGATTATGATGATGAGGGTAACATGGAGCAACACCAT 1676
Query 1561 GAAGAGCGAA-CACCATTTACTAGAAGAGGAAGTCTAAATAACCGCGGCTAA 1611
||||| |||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1677 GAAGAACGAATC-CCATTTACTAGAAGAGGAAATCTAAATAACCGCGGCTAA 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5