BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909617

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80890.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   396    5e-110


> AT1G80890.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G16000.1); 
Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:30397128-30398210 
FORWARD LENGTH=661
Length=661

 Score =  396 bits (214),  Expect = 5e-110
 Identities = 234/243 (96%), Gaps = 3/243 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAATGAGAGCAAGAGCAATTT--G-GGAGGAGGATTTAGGGCAAAGATGGAGCAC  57
            ||||||||||||||||||||||||||  | ||||||||| ||||||||||||||||||||
Sbjct  84   ATGGGAAATGAGAGCAAGAGCAATTTGGGAGGAGGAGGAATTAGGGCAAAGATGGAGCAC  143

Query  58   TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  144  TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC  203

Query  118  TTCGGAATCCCCTGGTACCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC  177
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  TTCGGAATCCCTTGGTATCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC  263

Query  178  TTGGAAAAAGCCGATCAAGCTCGAAAAGCTCGTCTCTCGTCATCTTCATCCTCGGATAAG  237
            ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  264  TTGGAAAAAGCTGATAAAGCTCGAAAAGCTCGTCTCTCATCATCTTCATCCTCGGATAAG  323

Query  238  TAG  240
            |||
Sbjct  324  TAG  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5