BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909617 Length=240 Score E Sequences producing significant alignments: (Bits) Value AT1G80890.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 396 5e-110 > AT1G80890.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16000.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:30397128-30398210 FORWARD LENGTH=661 Length=661 Score = 396 bits (214), Expect = 5e-110 Identities = 234/243 (96%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 1 ATGGGAAATGAGAGCAAGAGCAATTT--G-GGAGGAGGATTTAGGGCAAAGATGGAGCAC 57 |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 84 ATGGGAAATGAGAGCAAGAGCAATTTGGGAGGAGGAGGAATTAGGGCAAAGATGGAGCAC 143 Query 58 TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC 203 Query 118 TTCGGAATCCCCTGGTACCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC 177 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 204 TTCGGAATCCCTTGGTATCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC 263 Query 178 TTGGAAAAAGCCGATCAAGCTCGAAAAGCTCGTCTCTCGTCATCTTCATCCTCGGATAAG 237 ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 264 TTGGAAAAAGCTGATAAAGCTCGAAAAGCTCGTCTCTCATCATCTTCATCCTCGGATAAG 323 Query 238 TAG 240 ||| Sbjct 324 TAG 326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10857833784 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5