BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909618
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2231 0.0
> AT1G80880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30395194-30396921 REVERSE LENGTH=1623
Length=1623
Score = 2231 bits (1208), Expect = 0.0
Identities = 1478/1607 (92%), Gaps = 23/1607 (1%)
Strand=Plus/Plus
Query 9 TAGGAGACTAACGCGAACTG-CACAATGGTC-GATTGTGCAACAACAATATCTTCTACGT 66
||||| ||| ||||||| | |||||||| | |||||| || || |||| ||| ||||||
Sbjct 24 TAGGAAACTCGCGCGAAC-GCCACAATGG-CGGATTGTTCAGCATCAATCTCTGCTACGT 81
Query 67 --T-TAGTGTCGACTTCATTGTTTTCCCA-CTCATCTTT-CCAAAACCACTCCTTCCCTT 121
| ||||||||| || ||||| | | |||| ||| |||||| || |||||| |||
Sbjct 82 CGTGCAGTGTCGACGTC---GTTTT-CGAGCTCA-GTTTCCCAAAATCATTCCTTCTCTT 136
Query 122 CAGCATTTCATCGAGCAGGTCTTGTGCATTCTCAAATCCTAAGCTATGTCCCACGTTTTG 181
||||||||||||||||||||| ||||||||||||| | |||||||| |||||| |||||
Sbjct 137 CAGCATTTCATCGAGCAGGTCATGTGCATTCTCAAGTTTTAAGCTATCTCCCACATTTTG 196
Query 182 TCTCCTCCAACCACTTCTCCACTC-AAATCATCTCCGCCATGTTTGATGTCAAC--CA-A 237
||| || || | ||||||||| | ||| |||||||| | |||||| ||||| | |
Sbjct 197 CCTCTTCTAATCGCTTCTCCAC-CAAAACCATCTCCGAAACATTTGATATCAACTTAACA 255
Query 238 GCCTTGGCTCCGTTGGTACAGGGTCTGATTGATTTGATCAGACATGTCTCTGAGCTAGAG 297
|| ||||||||||| | | |||||||||||||||| |||||||| ||||||||||| |||
Sbjct 256 GCATTGGCTCCGTTAGAAAAGGGTCTGATTGATTTAATCAGACAGGTCTCTGAGCTGGAG 315
Query 298 TCAGAGGCGGATGCCATGGCATCTCTAGAGGAATCATCCTTTGATCTAAATCATGACTCT 357
|||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 316 TCAGAGGCGGATGCCATGGCTTCTCTGGAGGACTCATCATTTGATCTAAATCATGATTCT 375
Query 358 TTCTACTCTTTAATCTGGGAATTAAGAGAGGAATGGAGGCTTGCCTTCCTAGCATTCAAA 417
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 376 TTCTACTCCTTAATCTGGGAATTAAGAGATGAATGGAGGCTTGCCTTTCTAGCATTCAAA 435
Query 418 TGGGGAGAGAAACGCGGCTGTGATGATCAGAGAGCTTGTGATTTGATGGTCTGGGTCTTG 477
||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||
Sbjct 436 TGGGGAGAGAAACGCGGCTGTGATGATCAGAAATCTTGTGATTTGATGATCTGGGTGTTG 495
Query 478 GGTAATCATCAAAAGTTCAACATTGCTTGGCGTTTGATCCGTGATATGTTTCATGTTTCA 537
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 496 GGTAATCATCAAAAGTTCAACATTGCTTGGTGTTTGATCCGTGATATGTTTAATGTTTCA 555
Query 538 AAAGATACTAGAAAGGCCATGTTTCTCATGATGGACAGATATGCTGCTGCTAATGATACT 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AAGGATACTAGAAAGGCCATGTTTCTCATGATGGACAGATATGCTGCTGCTAATGATACT 615
Query 598 ATCCAAGCTATTCGGACATTTGATATTATGGATAAGTTTAAACACACCCCTGATGATGAA 657
| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 616 AGCCAAGCTATTCGGACATTTGATATTATGGATAAGTTTAAACACACTCCTTATGATGAA 675
Query 658 GCATTTCAAGGACTGCTATATGCCTTGTGTAGACATGGGCACATTGAAAAAGCTCAAGAG 717
|||||||||||| |||||| ||| |||||||||||||| ||||||||||||||| |||||
Sbjct 676 GCATTTCAAGGATTGCTATGTGCATTGTGTAGACATGGCCACATTGAAAAAGCTGAAGAG 735
Query 718 TTCATGCTTGCAAGCAAAAAGCTCTTTCCGGTCGATGTTGAGGGATTCAACATCATTCTT 777
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 736 TTCATGCTTGCAAGCAAAAAGCTCTTTCCGGTGGATGTTGAGGGATTCAACGTAATTCTT 795
Query 778 AATGGTTGGTGTAACATTTGGACTGATGTGACTGAAGCAAAGAGGATTTGGCGAGAGATG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AATGGTTGGTGTAACATTTGGACTGATGTGACTGAAGCAAAGAGGATTTGGCGAGAGATG 855
Query 838 GGGAATTACTGTATCACGCCTAACAAGGACTCTTTCAGTCACATGATCTCTTGCTTCTCT 897
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 856 GGGAATTACTGTATCACGCCTAACAAGGACTCTTACAGTCACATGATCTCTTGCTTCTCT 915
Query 898 AAAGTTGGGAACCTTTTTGATTCTCTCAGGCTATACGATGAGATGAAGAAACGGGGATTG 957
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 916 AAAGTTGGGAACCTTTTTGATTCTCTCAGGCTATACGATGAAATGAAGAAACGGGGATTG 975
Query 958 GCTCCAGGGATTGTAGTTTACAATTCTTTGCTTTATGTGTTGACCCGTGAGAATTGCTTT 1017
||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 976 GCTCCAGGGATTGAAGTTTACAATTCCTTGGTTTATGTGTTGACCCGTGAGGATTGCTTT 1035
Query 1018 CATGAAGCTATGAAGCTTTTGGAAAAGATGGACGAGGAAGGATTAAAACCAGGTTCAGTC 1077
||||||||||||||||| || ||||| || |||||||||||||||| |||| ||||||
Sbjct 1036 GATGAAGCTATGAAGCTTATGAAAAAGTTGAACGAGGAAGGATTAAAGCCAGATTCAGTG 1095
Query 1078 ACCTACAACTCAATGATACGTCCCCTTTGTGAGGCTGGAAAGCTGGACCTTGCCAGCAAT 1137
||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||| |||
Sbjct 1096 ACCTACAACTCGATGATACGCCCCCTTTGTGAGGCTGGAAAGCTGGACGTAGCCAGGAAT 1155
Query 1138 GTATTGGCAACCATGATAAGTGAGAACCTTAGTCCAACAGTTGATACATTTCATGCATTC 1197
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GTATTGGCAACCATGATTAGTGAGAACCTTAGTCCAACAGTTGATACATTTCATGCATTC 1215
Query 1198 CTTGAGGCTGTAAATTTCGATACAAA-TTTGGAGGTTTTAGGCCAAATGAAGGTTTCTGG 1256
|||||||||||||||||||| | ||| ||| ||||||||||||||||||||| | ||||
Sbjct 1216 CTTGAGGCTGTAAATTTCGAGA-AAACTTTAGAGGTTTTAGGCCAAATGAAGATCTCTGA 1274
Query 1257 TTTAGGTCCTACAGAAGACACCTTTCTTCTTATTCTTGGAAAATTGTTCAAGGGAAAGCA 1316
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TTTAGGTCCTACAGAAGAGACCTTTCTTCTTATTCTTGGAAAATTGTTCAAGGGAAAGCA 1334
Query 1317 ACCAGAAAATGCTTTGAAGATCTGGGCAGAAATGGATCGTTTCGAGATAGTGGCTAATCC 1376
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1335 ACCAGAAAATGCTTTGAAGATCTGGGCAGAAATGGATCGTTTTGAGATAGTGGCTAATCC 1394
Query 1377 TGCTCTTTACTTGGCTACAGTACAGGGCCTCTTGTCATGTGGGTGGCTTGAAAAGGCCAG 1436
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1395 TGCTCTTTACTTGGCTACAATACAGGGCCTTTTGTCATGTGGGTGGCTTGAAAAGGCCAG 1454
Query 1437 AGAGATCTATTCAGAGATGAAATCAAAGGGGTTCCCAGGAAATCCTATGCTCCAGAAACT 1496
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1455 AGAGATCTATTCAGAGATGAAATCAAAGGGGTTCGTAGGAAATCCTATGCTCCAGAAACT 1514
Query 1497 TCTGGAGGAGCAAAAGGTGAAGGGGATCAGAAAAAGCAAGAGGATAGA-TCTTCAAAAAG 1555
||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 1515 TCTTGAGGAGCAAAAGGTGAAGGGGGTCAGAAAAAGCAAGAGGAT-GAATCTTCAAAAAG 1573
Query 1556 TTGGTTCTCGGGGAGGCTATAAGGGTCAGCGATCAATATACAAAAAA 1602
||||||||| || |||||| |||||||| |||||| || ||| ||||
Sbjct 1574 TTGGTTCTCAGGAAGGCTACAAGGGTCAACGATCAGTAGACAGAAAA 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5