BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909633
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80750.1 | Symbols: | Ribosomal protein L30/L7 family prote... 1225 0.0
> AT1G80750.1 | Symbols: | Ribosomal protein L30/L7 family protein
| chr1:30348801-30350564 FORWARD LENGTH=975
Length=975
Score = 1225 bits (663), Expect = 0.0
Identities = 717/744 (96%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGAAGAAGCTAAGGGTTTGGATTACATACCGGAGATTGTACTGAAGAAGAGG 60
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 102 ATGGCTGAGGAAGAAGCTAAGGGTTTGGATTACATACCGGAGATAGTACTGAAGAAGAGG 161
Query 61 AAGAACAGAGATGAGCTTGCCTTTATCAGGAAGAAGCAACTTGAGTTGGGCAATTTCGGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 162 AAGAACAGAGATGAGCTTGCCTTTATCAGGAAGAAGCAACTTGAGTTGGGTAATTCCGGC 221
Query 121 AAGAAGAAGAAGAAAGTCTCTGATATCAAACGTCCTGAAGATTTTGTGCTTGAGTTCAGG 180
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 222 AAGAAGAAGAAGAAAGTCTCTGATATCAAACGTCCTGAAGATTTTGTTCATGAGTTCAGG 281
Query 181 GCTAAGGAAATAGATATGATCCGGATGAAGCAAAGAGTAAAGAGGCCAAAGTCATCTCCT 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GCTAAGGAAGTAGATATGATCCGGATGAAGCAAAGAGTAAAGAGGCCAAAGTCATCTCCT 341
Query 241 CCACCAGTTAAATCAGACCTCGTTTTTATCATACGCATACAAGGCAAGAATGATATGCAC 300
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 342 CCACCAGTTAAATCTGACCTGGTTTTCATCATACGCATTCAAGGCAAGAATGATATGCAC 401
Query 301 CCAAAGACCAAGAGGATTCTTAACAATTTGCAACTTAGGAGCGTCTTTACTGGTGTATTT 360
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 402 CCAAAGACCAAGAGGATTCTTAACAATTTGCAACTAAAGAGCGTCTTTACTGGTGTATTT 461
Query 361 GCCAAAGCAACTGACAGTTTGTTCCAAAAGCTTCTCAAAGTGCAGCCTTATGTCACTTAT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GCTAAAGCAACTGACAGTTTGTTCCAAAAGCTTCTCAAAGTGCAGCCTTATGTCACTTAT 521
Query 421 GGATACCCGAATGATAAGAGCGTTAAGGACCTCATATACAAAAAGGGATACACAATCATA 480
|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 522 GGATACCCGAATGATAAGAGTGTTAAGGACCTTATATACAAAAAGGGATGCACAATCATT 581
Query 481 GAGGGAAATCCTGTTCCTCTTACTGACAACAACATAATCGAACAGGCTCTAGGAGAACAC 540
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 582 GAGGGAAATCCTGTTCCTCTTACCGACAACAATATAATCGAACAGGCTCTAGGAGAACAC 641
Query 541 AAAATCTTTGGCATAGAAGACCTTGTGAATGAGATAGCAAGAGTTGGCGATCATTTCAGA 600
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 642 AAAATCTTGGGCATAGAAGACCTTGTGAATGAGATAGCAAGAGTCGGAGATCATTTCAGA 701
Query 601 GAAGTTATGAAATTCTTGGGACCCTTGAAACTCAACAAGCCTGTGGCTGATGTTTTGCAC 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GAAGTTATGAGATTCTTGGGACCCTTGAAACTCAACAAGCCTGTGGCTGATGTTTTGCAC 761
Query 661 GGGAAGAAACAAGTTTTCAGCGAAGGAGGAGATACTGGAAATCGCGAAGATAAGATCAAT 720
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 762 CGGAAGAAACAAGTTTTCAGCGAAGGAGGAGATACCGGAAACCGCGAAGATAAGATCAAT 821
Query 721 GATCTCATCAGCAAAATGAATTAG 744
||||||||||||||||||||||||
Sbjct 822 GATCTCATCAGCAAAATGAATTAG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5