BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909634
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80745.1 | Symbols: | Transcription factor TFIIIC, tau55-re... 429 7e-120
AT3G15420.1 | Symbols: | Transcription factor TFIIIC, tau55-re... 333 6e-91
> AT1G80745.1 | Symbols: | Transcription factor TFIIIC, tau55-related
protein | chr1:30347426-30348436 FORWARD LENGTH=566
Length=566
Score = 429 bits (232), Expect = 7e-120
Identities = 285/309 (92%), Gaps = 9/309 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGACGAGTATGTTATGATCGATCTTGATGACGTTTCAAGGCACATTGACATTCCA 60
|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 143 ATGGAGGATGAACATGTTATGATTGATCTTGATGACGTTTCAAGGCACATTGACATTCCA 202
Query 61 TCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 203 GCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATAGAT 262
Query 121 GACAAAATCAAGCTGGTTGGAGAATATATAGAAACGATTGGTACATGCCTTGCTTTCTCT 180
| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 263 GGCAAAATGAAGCTGGTAGGAGAATATATAGCAACGATTGGTACATGCCTTGCTTTCTCT 322
Query 181 GACAAATGTGAAAACCAGACGCCACAGAAGAAGACAGTTG--CC-------AAACTCCAC 231
|||||| |||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 323 GACAAAGGTGATAACCAGACGCCACAGAAGAAGACAGTTGAACCTGTTGCCAAACTCCAC 382
Query 232 AAGATTCTCAAGTTTAGGTTAGCACCATTAGACAGTGAAGATGGAGTAACAAAAACAACC 291
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 383 AAGATTCTCAAGTTTAGGTTAGCACCATTAGACAACGAAGATGGAGTAACAAAAACAACC 442
Query 292 ACTTTGTAA 300
| |||||||
Sbjct 443 AATTTGTAA 451
> AT3G15420.1 | Symbols: | Transcription factor TFIIIC, tau55-related
protein | chr3:5207577-5208359 REVERSE LENGTH=521
Length=521
Score = 333 bits (180), Expect = 6e-91
Identities = 280/324 (86%), Gaps = 24/324 (7%)
Strand=Plus/Plus
Query 1 ATGGAGGACGAGTATGTTATGATCGATCTTGATGACGTTTCAAGGCACATTGACATTCCA 60
|||||||| || | ||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 71 ATGGAGGAGGAATTTGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCA 130
Query 61 TCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGAT 190
Query 121 GACAAAATCAAGCTGGTTGGAGAATATATAGAAACGATTGGTACATGCCTTGCTTTCTCT 180
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 191 GGCAAAATCAAGCTGGTTGGAGAATATATTGAAACGATTGGTACATGCCTTGCTTTCTCT 250
Query 181 GACAA--A-----T----G----TGAAAACCAGACGCCACA---GAAGA-A---GA-CA- 216
|| || | | | ||||||||||| |||||| ||||| | || |
Sbjct 251 GAAAAGGAAGAAGTTTCAGCAAGTGAAAACCAGATGCCACATAAGAAGATAATTGAACCT 310
Query 217 GTTGCCAAACTCCACAAGATTCTCAAGTTTAGGTTAGCACCATTAGACAGTGAAGATGGA 276
||||| ||||||||||||||||| |||||||| |||||| ||||||||| ||| ||||||
Sbjct 311 GTTGCAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGACAATGATGATGGA 370
Query 277 GTAACAAAAACAACCACTTTGTAA 300
| ||||||||||| || |||||||
Sbjct 371 GAAACAAAAACAAACAATTTGTAA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5