BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909652
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80600.1 | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:3029... 2213 0.0
> AT1G80600.1 | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:30298499-30300553
REVERSE LENGTH=1590
Length=1590
Score = 2213 bits (1198), Expect = 0.0
Identities = 1319/1378 (96%), Gaps = 5/1378 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTCTTGGCCAAATCACCCTGCCACGCGCGCCGTCGTCTGAGATTGGCGTCTTT 60
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 41 ATGGCGTCTCTTAGCCAAATCACCCTGCCACGCGCGCCGTCGTCGGAGATTGGCCTCTTA 100
Query 61 CGCCGTCGATTTGAACGACCGATCATCAGAACCCGGATCGGATTCAGCGGCCGGATAGCG 120
||||||||||| || || |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 101 CGCCGTCGATTGGAGCGGCCGATCATCAGAACCCGGATCGGATTCAACGGCCGGATTGCG 160
Query 121 AGCGTATTGACAAACGCAGGGGAACAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 161 AGCGTATTGACTAACGCAGGGGACCAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 220
Query 181 GTGATTGAAGAGGAAGCTAAAGTTATTGTGGGTACCTACGCGCGAGCGCCAGTGGTGCTT 240
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 221 GTGATTGAAGAGGAAGCCAAAGTTATTGTGGGTACCTACGCGCGAGCTCCAGTGGTTCTC 280
Query 241 TCAAGTGGGAAAGGTTGTAAATTGTTCGACCCAGAAGGGAAAGAGTATCTGGATTGTGCA 300
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 281 TCGAGTGGGAAAGGTTGTAAATTGTTCGACCCTGAAGGAAAAGAGTATCTGGATTGTGCA 340
Query 301 TCTGGAATTGCTGTGAATGCTCTTGGCCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 360
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 341 TCTGGAATCGCTGTGAATGCTCTTGGTCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 400
Query 361 GACCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTCTATTACACGATCCCTCAGCAGATA 420
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 401 GAGCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTTTATTACACGATCCCT---CAGATA 457
Query 421 GAGCTCGCAAAACGCTTGGTGGCAAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCT 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 458 GAGCTCGCAAAACGCTTGGTGGCGAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCG 517
Query 481 GGAACGGAAGCCAATGAAGCAGCCATCAAGTTTTCAAGAAAGTTCCAGAGATTCACCCAT 540
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 518 GGAACGGAAGCCAATGAAGCAGCCATTAAGTTTTCAAGAAAATTCCAGAGATTCACCCAT 577
Query 541 CTAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CCAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 637
Query 601 ACCTTAGGAGCTCTTGCTTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ACCTTAGGAGCTCTTGCCTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 697
Query 661 ATGCCAGGTGTAACATTCTTAGAATATGGTAACATTCAAGCCGCCACAGACCTTATCCGC 720
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 698 ATGCCTGGTGTAACCTTCTTAGAATATGGTAACATTCAAGCAGCCACAGACCTTATCCGC 757
Query 721 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 817
Query 781 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 877
Query 841 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 937
Query 901 TTCTGTGTAACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 960
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TTCGGTGTGACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 997
Query 961 GGAGCGGTGCTCGTGACTGAAAAGGTTGCAGAGACCATAAAATACGGAGATCACGGAAGT 1020
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 998 GGAGCGGTGCTGGTGACTGAAAAGGTTGCAGAGACCATAAACTACGGAGATCATGGAAGT 1057
Query 1021 ACATTTGCAGGCAACCCTCTTGTGTGCAGTGCAGCCATTGCAGTCATTGATAAAGTATCG 1080
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1058 ACATTTGCAGGCAGCCCTCTTGTGTGCAGTGCAGCCATTGCAGTTATGGATAAAGTATCG 1117
Query 1081 AAGCCCTCTTTCTTGTCCAGTGTCTCAATTAAAGGTCGATACTTTAGAGACCTGTTGGTT 1140
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1118 AAACCCTCTTTCTTGTCCAGTGTCTCAAATAAAGGTCGATACTTTAGAGACCTGTTGGTG 1177
Query 1141 AAAAAACTTGGTGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1200
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AAAAAACTTGGAGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1237
Query 1201 GTGGAACTCGATGTGCCGGCAAATTCACTGGTCGATGCTTGCCGAGATTCGGGTCTTCTG 1260
||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1238 GTGGAGCTCGATGTGCCGGCAAGCTCACTGGTTGATGCTTGCCGAGATTCGGGTCTTCTG 1297
Query 1261 ATTTTGACAGCAGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1320
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 ATCTTGACAGCGGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1357
Query 1321 GAGGAAATCGAACGTGCGGTTGAGATAATGT-TCCAAAATTTAATTGTGCTTGACTGA 1377
|||||||||||||||||||||||||| |||| || ||||||| | || |||||| |||
Sbjct 1358 GAGGAAATCGAACGTGCGGTTGAGATCATGTCTC-AAAATTTGACTGCGCTTGATTGA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5