BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909665

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80500.1 | Symbols:  | SNARE-like superfamily protein | chr1...   538    2e-152


> AT1G80500.1 | Symbols:  | SNARE-like superfamily protein | chr1:30270529-30272668 
FORWARD LENGTH=898
Length=898

 Score =  538 bits (291),  Expect = 2e-152
 Identities = 315/327 (96%), Gaps = 0/327 (0%)
 Strand=Plus/Plus

Query  109  AGAGAAGATGCTGCCCAGTTGCACCAATTTATATTACATGCCGCATTAGATGTTGTCCAA  168
            |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct  335  AGAGAAGATGCTGCACAGTTGCACCAATTTATATTACATGCAGCGTTAGATGTTGTCCAA  394

Query  169  GACCTAGCATGGACTACAAGTGCCATGTTCTTGAAGTCAGTAGACAGGTTTAACGATCTG  228
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  395  GACCTAGCATGGACTACAAGTGCCATGTTCTTGAAGTCAGTGGACAGGTTTAACGATCTG  454

Query  229  GTTGTGTCAGTGTATGTTACCGCAGGCCATACTCGACTCATGCTCCTTCATGATTCACGG  288
            ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  455  GTTGTGTCAGTATATGTTACCGCAGGCCATACCCGACTGATGCTCCTTCATGATTCACGG  514

Query  289  AATGAGGACGGCATCAAGAGCTTCTTTCAAGAGGTGCATGAGCTCTATATAAAGATTCTT  348
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  515  AATGAGGACGGCATCAAGAGCTTCTTTCAAGAGGTGCATGAGCTTTATATAAAGATTCTT  574

Query  349  CTGAATCCCTTGTATCTTCCTGGTTCTCGGATTACGTCGTCACATTTTGACACTAAAGTA  408
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  575  CTGAATCCCTTGTATCTTCCTGGTTCTCGGATAACGTCGTCACATTTTGACACCAAAGTA  634

Query  409  CGTGCACTGGCAAGAAAGTATCTGTAG  435
            |||||||| ||||||||||| ||||||
Sbjct  635  CGTGCACTTGCAAGAAAGTACCTGTAG  661


 Score =  128 bits (69),  Expect = 4e-29
 Identities = 77/81 (95%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTAACACCGCCTGCTTTATAATTGTGGGTCGGAATGATATTCCCATCTATGAAGCT  60
            ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  254  ATGGCTAACACTGCCTGCTTTATCATTGTGGGCCGGAATGATATTCCCATCTATGAAGCT  313

Query  61   GAAGTTGGATCTGCTGCCAAA  81
            ||||||||||||||||| |||
Sbjct  314  GAAGTTGGATCTGCTGCTAAA  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5