BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909676
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80380.2 | Symbols: | P-loop containing nucleoside triphosp... 2056 0.0
> AT1G80380.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:30217219-30220004
FORWARD LENGTH=1704
Length=1704
Score = 2056 bits (1113), Expect = 0.0
Identities = 1287/1372 (94%), Gaps = 8/1372 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTCGCAATGTCTTGGAGTAGTTTGATATCACCGGCTCTTCAGGATTATAATAAT 60
|||||||||||||| ||| |||||||||||||||| || |||||||| |||||||||||
Sbjct 114 ATGGCGGTCGCAATATCTGGGAGTAGTTTGATATCGTCGACTCTTCAGCATTATAATAAT 173
Query 61 CGGATTAATCTCAGAGATTATCCGATTCCGTGTCACTCTTCTAATCCTATTTGCAATTCT 120
|||||| || || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 174 CGGATTTATATCCGAGATTATCCGATTCCGTGTCACTCTTCTAATCCAATTTGCAATTCT 233
Query 121 TTTAATTTCAAAAGACGTCCTTTTTCTTCTCCTTCCTCCAAATATAACGACCATGTCGTT 180
|||||||||||||||||| | || ||| || ||||| |||||| ||||||||||||||||
Sbjct 234 TTTAATTTCAAAAGACGTTCGTTCTCTCCTTCTTCCCCCAAATTTAACGACCATGTCGTT 293
Query 181 AACCCTTCTTCTTC-T-TCT-TCCTCCAAGCTTTCTCCTATTCGAACCCATTTCTCTTTC 237
|||||||| ||||| | | | ||||||||||||||||| ||||||||||||| |||||||
Sbjct 294 AACCCTTCCTCTTCTTATTTATCCTCCAAGCTTTCTCCAATTCGAACCCATTCCTCTTTC 353
Query 238 GCTGGGTGTGGCTGCTCCTGGATTCAGGACAATTCAATGGTTCATGATTATGCT---ACA 294
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 354 GCTGCGTGTGGCTGCTCCTGGATTCAAGACAATTCAATGGTTCATGATTATGCTACAACA 413
Query 295 ACTAATGGGACGTCCAAGCGATGCTCGGCGTTACCAACAACAAAAACAGTGGATGTCTCT 354
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 414 ACTAATGGGACGTCCAAGCGTTGCTCGGCGTTACCAACAACAAACACAGTGGATGTCTCT 473
Query 355 TCAGTGTCAGATCTTTTTGAATTCATTTGCTCGGGTCCTCTCGTAGACAAGATTGGTATC 414
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 474 TCGGTGTCAGATCTTTTTGAATTCATATGCTCGGGTCCTCTCGTAAACAAGATTGGTATC 533
Query 415 ACTCCTCAAAGAGTTGGCCAGTCTATTGACAAATGGTTACTATACGGCTCACAACTCTGC 474
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 534 ACTCCTCAAAGAGTTGGCCAGTCTATTGACAAATGGTTACTCTACGGCTCACAACTTTGT 593
Query 475 AGACTATTTCAGCTTAATGAGCTTAAGCTCACAATTCCTCAGAAAACTAGGCTATACCAC 534
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 594 AGACTGTTTCAGCTTAATGAGCTTAAGCTTACAATTCCTCAGAAAGCTAGGCTATACCAC 653
Query 535 TACTATATACCCGTATTTATTTGGTGCGAAGATCAGATTGCTTTGCATAAGTCCAAGTTT 594
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 TACTACATACCCGTTTTTATTTGGTGCGAAGATCAGATTGCTTTGCATAATTCCAAGTTT 713
Query 595 AAAGATGGAGATGATGTACCTCCGTTAGTGATTGGATTTAGCGCTCCTCAAGGATGTGGC 654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 714 AAAGATGGAGATGATGTACCTCCTTTAGTGATTGGATTTAGCGCTCCTCAAGGATGTGGC 773
Query 655 AAGACTACACTTGTGTTTGCACTTGACTATCTTTTCAAAACAACAAAAAAGAAGTCGGTG 714
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 774 AAGACTACACTTGTGTTTGCACTTGATTATCTTTTCAAGACAACAAAAAAGAAGTCAGCG 833
Query 715 ACGATATCAATAGACGATTTTTACTTGACTGCACAAGGTCAGGCTGAATTGAGGGGAAAG 774
|||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 834 ACGATATCCGTAGACGATTTTTACTTGACTGCAGAAGGCCAGGCTGAATTGAGAAAAAAG 893
Query 775 AATCCAGGAAATGCACTTTTAGAGTATCGTGGTAATTCAGGAAGCCATGATCTGCAACTC 834
|||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||| ||||
Sbjct 894 AATCCAGGAAATGCACTTCTAGAGTATCGTGGAAATGCAGGAAGTCATGATCTGAAACTT 953
Query 835 TCTGTTGAGACACTAGAAGCCCTGACTAAACTGACCAAAGAAGG-TATAAAGATGAAGGT 893
|||||||| ||||||||||||||| | ||||||||||||||||| | |||||||||||||
Sbjct 954 TCTGTTGAAACACTAGAAGCCCTGTCGAAACTGACCAAAGAAGGCT-TAAAGATGAAGGT 1012
Query 894 ACCTAGGTACGACAAGTCTGCCTATAGTGGGAGAGGTGACAGAGCCGATTCATCAACATG 953
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ACCTAGGTACAATAAGTCTGCCTATAGTGGGAGAGGTGACAGAGCCGATTCATCAACATG 1072
Query 954 GCCTGAAGTTGAAGGACCTCTAACGGTTATTCTCTTTGAGGGATGGATGCTTGGTTTTAA 1013
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1073 GCCTGAAGTTGAAGGACCTCTATCGGTTATTCTCTTTGAGGGATGGATGCTTGGTTTTAA 1132
Query 1014 GCCTCTTCCAACTGACGTTGTTAAAGCAGTTGATCCGCAGCTGGAGATTGTGAATAAGAA 1073
|||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1133 GCCTCTTCCAGCTGACGTTGTTAAAGCAGTTGACCCACAGCTGGAGGTTGTGAATAAGAA 1192
Query 1074 CCTTGAAGCCTATTATGACGCATGGGACAAGTACATTGATGCTTGGGTTGTCATCAAAAT 1133
||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1193 CCTTGAAGCGTATTACGACGCATGGGACAAGTACATCGATGCTTGGGTCGTCATCAAAAT 1252
Query 1134 CCAGGACCCAAGTTATGTATACCGGTGGCGTCTTCAGGCGGAAATCGCCATGAGGCAGGC 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CCAGGACCCAAGTTATGTATACCGGTGGCGTCTTCAGGCGGAAATCGCCATGAGGCAGGA 1312
Query 1194 TGGTAAAGCTGGGATGTCGGATGAGGAGGTGAATGACTTTGTGTCGCGGTATTTGCCGGC 1253
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGGCCAAGCTGGGATGTCGGATGAGGAGGTGAATGACTTTGTGTCGCGGTATTTGCCGGC 1372
Query 1254 CTATAAGGCCTATCTTCCAACTCTTTATGCGGAAGGACCAAGCGGCTCGGACCCAGACCG 1313
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1373 GTATAAGGCCTATCTTCCAACTCTTTACGCGGAAGGGCCAAGCGGCTCAGACCCAGACCG 1432
Query 1314 TGTCCTTGTGATAGATATCGATGAAGAAAGGAACCCGATACTCGCAAACTAA 1365
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TGTCCTTGCGATAGATATCGATGAAGAAAGGAACCCGATACTCGCAAACTAA 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5