BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909680
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80340.1 | Symbols: GA4H, ATGA3OX2, GA3OX2 | gibberellin 3-o... 1628 0.0
> AT1G80340.1 | Symbols: GA4H, ATGA3OX2, GA3OX2 | gibberellin 3-oxidase
2 | chr1:30200693-30202200 REVERSE LENGTH=1083
Length=1083
Score = 1628 bits (881), Expect = 0.0
Identities = 989/1043 (95%), Gaps = 0/1043 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAAC 97
Query 61 CTACCCGACTTCAAAGCCCTCCCAGATTCTTACACATGGACCCCCAAAGATGATCTCCTC 120
| ||| ||||||||| | ||||| ||||||||||| ||||| || |||||||||||||||
Sbjct 98 CCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCCTAAAGATGATCTCCTC 157
Query 121 TTCTCTGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATCCCCACGTG 180
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 158 TTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATATCCACGTG 217
Query 181 ACCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTACAGATCAGCAACCACGGC 240
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 218 GCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCAGATCACCAACCACGGC 277
Query 241 GTACCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTAAC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 278 GTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTCCC 337
Query 301 GTGCAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTGGCT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 338 GTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTAGCT 397
Query 361 CGTATTGCTTCTTTCTTTAATAAGAAAATGTGGTCCGAAGGTTTCACCGTTATTGGCTCT 420
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 398 CGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTTCACCGTTATTGGCTCT 457
Query 421 CCTCTCCAAGATTTCCGTAAACTCTGGCCCAGCCATCACCTCAAATACTGTGAAATTATT 480
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 458 CCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAAATACTGTGAAATTATT 517
Query 481 GAAGAGTACGGAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTGGCATTGGGT 540
|||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 518 GAAGAGTATGAAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTCGCATTAGGT 577
Query 541 TCACTGGGAGTGGAAGAAAAGGACATAAAATGGGCTGGGCCTAATTCAGACTTTCAAGGA 600
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 578 TCACTGGGAGTTGAAGAAAAGGACATACAATGGGCCGGGCCTAATTCAGACTTTCAAGGA 637
Query 601 ACCCAAGCAGCTATCCAGCTAAACCATTACCCCATATGCCCAGAACCAGACAGGGCCATG 660
|||||||||| |||||| ||||||||||| || | ||| |||||||||||||| ||||||
Sbjct 638 ACCCAAGCAGTTATCCAACTAAACCATTATCCAAAATGTCCAGAACCAGACAGAGCCATG 697
Query 661 GGCCTCGCGGCCCATACCGACTCAACTCTCATGACCATTCTGTACCAGAACAACACCGCC 720
|||||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 698 GGCCTCGCAGCCCATACAGACTCGACCCTCATGACAATTCTGTACCAGAACAACACCGCC 757
Query 721 GGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGTGCCACCTGTCCCTGGCTCG 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 758 GGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGCGCCACCTGTCCCTGGCTCG 817
Query 781 CTAGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCAAGCGTG 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 818 CTGGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCGAGCGTG 877
Query 841 CTTCACCGAGCCAGGGTTAACCACGTCCGGTCTCGGTTCTCAATGGCTTACCTGTGGGGT 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 878 CTTCACCGAGCCAGGGTTAACCACGTCCGATCTCGGTTCTCAATGGCTTACCTGTGGGGT 937
Query 901 CCACCATCCGATATAATGATCTCTCCACTTCCGAGACTCGTTGATCCTCTCCAATCTCCT 960
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 938 CCACCATCCGATATAATGATCTCTCCACTTCCCAAACTGGTTGATCCTCTCCAATCTCCT 997
Query 961 CTCTACCCATCTCTCACTTGGAAACAGTACCTCGCTACCAAAGCTACTCATTTTAATCAG 1020
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 998 CTCTACCCATCTCTCACTTGGAAACAATACCTTGCTACCAAAGCTACTCATTTTAATCAA 1057
Query 1021 TCTCTTTCCATTATTAAAAATTA 1043
|||||||||||||||| ||||||
Sbjct 1058 TCTCTTTCCATTATTAGAAATTA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5