BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909682
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80320.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1544 0.0
AT1G80325.1 | Symbols: | other RNA | chr1:30196605-30197933 RE... 830 0.0
> AT1G80320.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:30196782-30197896
FORWARD LENGTH=963
Length=963
Score = 1544 bits (836), Expect = 0.0
Identities = 922/964 (96%), Gaps = 4/964 (0%)
Strand=Plus/Plus
Query 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCCGCGATAAACTAGTG 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCAGCGATAAACTAGTG 60
Query 61 CGAGGCACGAGTCACTGGATCACGACCAGGGAAAATGTAAGAAGAGCCATGGAGGAGCAG 120
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 61 CGAGGCACGAGTCACTGGATCACGACCAGGGACGATGTCAGAAGAGCCATGGAGGGGCAG 120
Query 121 GGTTGGTTTGTGGCAGAGTTCAATGGCGTCTCATGTGACCTCAGGGACAAGTTGCTGGCC 180
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 121 GGTTGGTTTGTGGCAGAGTTCAGTGGCGTCTCATCTGACCTCAGGGACAACTTGCTGGCC 180
Query 181 GGCATGAAGGAGATGTATGATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCATGAAGGAGATGTATTATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240
Query 241 GCCTCCCATGGCTACATGTCTATGGTTGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCGTCCCATGGCTACATGTCTATGGTAGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300
Query 301 ATCGACTATGCAACCGAGCTCCAAGCTTGCAAAGATTTCTCTAAACTACTCTGGCCACAA 360
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 301 ATCGATTATGCAACCGAGCTTCAAGCTTGCAAAGACTTCTCTAAACTACTCTGGCCACAG 360
Query 361 GGAAACGATCCCTTCTGTCAAACCACGCATATGTATGCAACGGCAATGGCAGAACTAGAC 420
|||||||||||||||||||||||||| ||||||||||||| | ||||||| || ||||||
Sbjct 361 GGAAACGATCCCTTCTGTCAAACCACACATATGTATGCAATGACAATGGCGGAGCTAGAC 420
Query 421 CAGGCGGTGATGAGGATGCTGTTTGAGAGCTATGGAATGGATGAGAAGAAGCATTCTGCG 480
||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 421 CAGACGGTGATGAGGATGTTGTATGAAAGCTATGGAATGGATGAGAAGAAGCATTCTGTG 480
Query 481 AGTCATTCCGAGTCAACTCGATACCTGTTGAGGATGCTGAGTTACCGGAGACAGGAAAAC 540
||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 481 AGTCACTCCGAGTCAACTCGATACCTGTTGAGGATGCTGAGTTACAGGAGACAGCAAAAC 540
Query 541 GGTGAAGCAAACACTGGCTTT-GTATCACACACTGATAAGAGCTTCATGAGTATCCTCCA 599
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGAAGCAAACACTGG-TTTCGTGTCACACACTGATAAGAGCTTCATGAGTATCCTCCA 599
Query 600 CCAGAACCACGTCGGAGGTCTCCAGCTGAAAACCATGACCGGTCAATGGGTCGGGTTTAA 659
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 600 CCAGAACCACGTCGGAGGTCTCCAGTTGAAAACCATGACCGGCCAATGGGTCGGGTTTAA 659
Query 660 CCCGTCCCCAACAAGATTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAACGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCCGTCCCCAACAAGATTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAACGA 719
Query 720 TAGGATAAAGGCATGTTACCACAAGGTAGTGATGAGCGCAGATGAGATTCGATACTCTTT 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TAGGATAAAGGCATGTTACCACAAGGTAGTGATGAGTGCAGATGAGATTCGATACTCTTT 779
Query 780 TGGGTTTTTCTCCTTCCACAAAGGAACCATTCGTACGCCGGAGGAGCTCGTCGATGACCA 839
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 780 AGGGTTTTTCTCCTTCCACAAAGGAACGATCCGTACGCCGGAGGAGCTCGTCGATGACCA 839
Query 840 ACATCCCCTCCGCTACAGTCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATCCCCTCCGCTACAATCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTA 899
Query 900 CCTCAATTCTCTCAAGAAATCCAGCGAGGATCTTCTCCAGATCTACTGCGGCGTCA-ATC 958
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 900 CATCAATTCTCTCAAGAAATCCAGCGAAGATCTTCTCCAGATCTACTGCGGCGTCACA-C 958
Query 959 CCTA 962
||||
Sbjct 959 CCTA 962
> AT1G80325.1 | Symbols: | other RNA | chr1:30196605-30197933
REVERSE LENGTH=1252
Length=1252
Score = 830 bits (449), Expect = 0.0
Identities = 546/592 (92%), Gaps = 10/592 (2%)
Strand=Plus/Minus
Query 377 GTCAAACCACGCATATGTATGCAACGGCAATGGCAGAACTAGACCAGGCGGTGATGAGGA 436
|||||||||| ||||||||||||| | ||||||| || ||||||||| ||||||||||||
Sbjct 626 GTCAAACCACACATATGTATGCAATGACAATGGCGGAGCTAGACCAGACGGTGATGAGGA 567
Query 437 TGCTGTTTGAGAGCTATGGAATGGATGAGAAGAAGCATTCTGCGAGTCATTCCGAGTCAA 496
|| ||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 566 TGTTGTATGAAAGCTATGGAATGGATGAGAAGAAGCATTCTGTGAGTCACTCCGAGTCAA 507
Query 497 CTCGATACCTGTTGAGGATGCTGAGTTACCGGAGACAGGAAAACGGTGAAGCAAACACTG 556
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 506 CTCGATACCTGTTGAGGATGCTGAGTTACAGGAGACAGCAAAACGGTGAAGCAAACACTG 447
Query 557 GCTTT-GTATCACACACTGATAAGAGCTTCATGAGTATCCTCCACCAGAACCACGTCGGA 615
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 G-TTTCGTGTCACACACTGATAAGAGCTTCATGAGTATCCTCCACCAGAACCACGTCGGA 388
Query 616 GGTCTCCAGCTGAAAACCATGACCGGTCAATGGGTCGGGTTTAACCCGTCCCCAACAAGA 675
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 387 GGTCTCCAGTTGAAAACCATGACCGGCCAATGGGTCGGGTTTAACCCGTCCCCAACAAGA 328
Query 676 TTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAA-CGATAG--GATAAAGGC- 731
||||||||||||||||||||||||||||||| | | ||| | | | ||| | | |
Sbjct 327 TTCGTCGTTCTCTCCGGCATGGGTCTCACGGTGAGCTCTAAACCAAATCCGATTA-GTCG 269
Query 732 ATGTTACCACAAGGTAGTGATGAGCGCAGATGAGATTCGATACTCTTTTGGGTTTTTCTC 791
| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 268 AAAC-ACCACAAGGTAGTGATGAGTGCAGATGAGATTCGATACTCTTTAGGGTTTTTCTC 210
Query 792 CTTCCACAAAGGAACCATTCGTACGCCGGAGGAGCTCGTCGATGACCAACATCCCCTCCG 851
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTTCCACAAAGGAACGATCCGTACGCCGGAGGAGCTCGTCGATGACCAACATCCCCTCCG 150
Query 852 CTACAGTCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTACCTCAATTCTCT 911
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 149 CTACAATCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTACATCAATTCTCT 90
Query 912 CAAGAAATCCAGCGAGGATCTTCTCCAGATCTACTGCGGCGTCA-ATCCCTA 962
||||||||||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 89 CAAGAAATCCAGCGAAGATCTTCTCCAGATCTACTGCGGCGTCACA-CCCTA 39
Score = 614 bits (332), Expect = 6e-175
Identities = 369/387 (95%), Gaps = 1/387 (0%)
Strand=Plus/Minus
Query 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCCGCGATAAACTAGTG 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1075 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCAGCGATAAACTAGTG 1016
Query 61 CGAGGCACGAGTCACTGGATCACGACCAGGGAAAATGTAAGAAGAGCCATGGAGGAGCAG 120
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1015 CGAGGCACGAGTCACTGGATCACGACCAGGGACGATGTCAGAAGAGCCATGGAGGGGCAG 956
Query 121 GGTTGGTTTGTGGCAGAGTTCAATGGCGTCTCATGTGACCTCAGGGACAAGTTGCTGGCC 180
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 955 GGTTGGTTTGTGGCAGAGTTCAGTGGCGTCTCATCTGACCTCAGGGACAACTTGCTGGCC 896
Query 181 GGCATGAAGGAGATGTATGATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGCATGAAGGAGATGTATTATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 836
Query 241 GCCTCCCATGGCTACATGTCTATGGTTGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 835 GCGTCCCATGGCTACATGTCTATGGTAGTTGACGATTACCGGATCCATGAGAGCTTGGGG 776
Query 301 ATCGACTATGCAACCGAGCTCCAAGCTTGCAAAGATTTCTCTAAACTACTCTGGCCACAA 360
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 775 ATCGATTATGCAACCGAGCTTCAAGCTTGCAAAGACTTCTCTAAACTACTCTGGCCACAG 716
Query 361 GGAAACGATCCCTTCTG-TCAAACCAC 386
||||||||||||||||| | ||| |||
Sbjct 715 GGAAACGATCCCTTCTGGTAAAAACAC 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5