BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909692
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80220.1 | Symbols: | Protein of unknown function (DUF1644)... 1031 0.0
> AT1G80220.1 | Symbols: | Protein of unknown function (DUF1644)
| chr1:30167839-30168606 FORWARD LENGTH=768
Length=768
Score = 1031 bits (558), Expect = 0.0
Identities = 702/771 (91%), Gaps = 12/771 (2%)
Strand=Plus/Plus
Query 1 ATGTGTAAAGAAAGACGTATAATGTGTGAGTCAAGCAACAAGATCAGAGTATCGCCATAC 60
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTAAGGAAAGACGTATAGTGTGTGAGTCAAGCAACAAGATCAGAGTATCGCCATAC 60
Query 61 CCGCTTCGATCTACTAGGACCAACAAACTCAAAGCAATTGAGTCACCTATTGA-GA--CA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 61 CCGCTTCGATCTACTAGGACCAACAAACTCAAAGCAATTGAGTCACCTATTGATGAGTCA 120
Query 118 GAAT-GGGAGGATGTGAGGTGTGTGATCTGCATGGAACCGCCCCACGATGCTGTTCTTTT 176
||| |||| |||||| ||||| ||||||||||||||||||| ||||| ||||| |||||
Sbjct 121 -AATTGGGAAGATGTGCGGTGTATGATCTGCATGGAACCGCCACACGAAGCTGTGCTTTT 179
Query 177 GACATGCTCTTCCTCCCTCAATGGATGTCGTCCTTACATGTGCGGCACGAGTGTTCGTCA 236
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GACATGCTCGTCCTCACTCAATGGATGTCGTCCTTACATGTGCGGCACGAGTTTTCGTCA 239
Query 237 TTCCAACTGTTTCAAACAGTTTAGCAGAAACAACAGAAAAAAGCACTCAAACACTAAGAC 296
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||
Sbjct 240 CTCCAACTGTTTCAAACAGTTTTGCAGAAACAACAGAAAAAAGCGCTCAAACACCAAGAC 299
Query 297 CTTACATTGCCCTCTATGTAGAGGAGAAGTGTTTGAGACGAAAAAGGCGGCGAAGACTAC 356
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| |
Sbjct 300 CTTACATTGCCCTCTTTGTAGAGGAGAAGTCTTGGAGACGAAAAAGGCTTCGAAGACTGC 359
Query 357 AAGAAGATTCATGAATGCTAAACCGAGGTCTTGCCCTGTGGATGACTGTGAATTTTCTGC 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 360 AAGAAGATTCATGAATGCTAAACCGAGGTCTTGCCCTGTGGATGGCTGTGAATTTTCAGG 419
Query 417 CACGTATTCTCACCTTAATAAGCACTTGAAAACTGAGCATCGGGGTATTGTCCC-GACAA 475
|| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| | |||
Sbjct 420 GACATATGCTCACCTTAATAAGCACTTGAAAACTGAGCATCAGGGTCTTGTCCCAG-CAA 478
Query 476 AGGTCGATCCACAAAGGCAATGTAGGTGGGAAATGATGGAAAGACATGCTGAATATGTTA 535
|||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 479 AGGTCGATCCACAAAGGCAAAGTAGGTGGGAAATGTTGGTAAGACATGCTGAATATGTTA 538
Query 536 ATCTCATGACTGCCGCTGGGATTCCACATATGTCTGAGGTTGTGCATCATCAACTTCCGA 595
|||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 539 ATCTCATGTCTGCAGCTGGGATTCCGCATATGTCTGGGGTTGTGCATCATCAACTTCCCA 598
Query 596 ACAATCATCATCTACCAATGTTTCATGTGAACTTTAATGGAACCCTGCAAAATTTG-ATT 654
||||||||||||| || |||||||| ||| ||||| ||||||| ||||||||||| ||
Sbjct 599 ACAATCATCATCTTCCGATGTTTCAGGTGGGCTTTAGTGGAACCATGCAAAATTTGGAT- 657
Query 655 GGTCCGAGTAATGTAAGTAACGGATTTAGTCTCGTCAACCACGCCTCACTTTTCATACCC 714
||||||||||||||||||||||||||| ||| ||||||| || || || |||| |||||
Sbjct 658 GGTCCGAGTAATGTAAGTAACGGATTTGGTCCCGTCAACTACCCCCCAGTTTTTGTACCC 717
Query 715 ACACTACAGTTTCGACCAATG---GACATGTATCGTGGTAGGAATCCATGA 762
| ||| |||||||||||| || ||||||||||||| ||||| |||||||
Sbjct 718 AGACTGCAGTTTCGACCAGTGTTTGACATGTATCGTGATAGGATTCCATGA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5