BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909718

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79990.1 | Symbols:  | structural molecules | chr1:30084114-...   728    0.0  


> AT1G79990.1 | Symbols:  | structural molecules | chr1:30084114-30092238 
FORWARD LENGTH=3934
Length=3934

 Score =  728 bits (394),  Expect = 0.0
 Identities = 432/451 (96%), Gaps = 0/451 (0%)
 Strand=Plus/Plus

Query  1    ATGTTCTATGGCACAGCTGTCTGGGACCCTTGGCTTATCGTTGGCCAGATTATTTGCCTC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  238  ATGTTCTATGGCACAGCTGTATGGGACCCTTGGCTTATCGTTGGCCAGATTATTTGCCTC  297

Query  61   CAGTGCTCCTACTATCTCACTCTTGGTCTCTTCACCATGGTCTTTCTTGGCCTTCGTGTT  120
            || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  298  CAATGCTCTTACTATCTCACTCTTGGACTCTTCACCATGGTCTTTCTTGGCCTTCGTGTT  357

Query  121  CCTCGCCTTAGTCTTGTCTACTTCTTCGATTACGCTACTCTCACTACTTCCACCTTCACC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  CCTCGCCTTAGTCTTGTCTACTTCTTCGATTACGCTACTCTCACTACTTCCACCTTCACC  417

Query  181  GGTTGGTCTGTTATTGCCTCTTTCCTCTTCTCTTCACTCGCAGGGGCTGTCTACATGATA  240
            |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct  418  GGTTGGTCTGTTATTGCCTCATTCCTCTTCTCTTCACTCGCTGGGGCTGTGTACATGATA  477

Query  241  TTTTTGGTGGAACGAGCTCGGAAATGCTTAGATTTCTCTGCAACTCTCTACATCATTCAT  300
            ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  478  TTTTTGGTGGAGCGAGCACGGAAATGCTTAGATTTCTCTGCAACTCTCTACATCATACAT  537

Query  301  CTCTTCTTCTGCATCTTGTATGGAGGATGGCCTTCCTCTATGGCTTGGTGGGTTGTTAAT  360
            |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct  538  CTCTTCTTTTGCATCATGTATGGAGGATGGCCTTCCTCTATGGCGTGGTGGGTTGTTAAT  597

Query  361  GGAACTGGTCTCGCTGTTATGGCTTTGCTAGCTGAGTACTTGTGCATTAAACGCGAACAG  420
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  598  GGAACCGGACTCGCTGTTATGGCTTTGCTAGCTGAGTACTTGTGCATTAAACGCGAACAG  657

Query  421  CAAGAGATTCCTATGGATCGGTTCCATTCAA  451
            | |||||| ||||||||||| ||||| ||||
Sbjct  658  CGAGAGATCCCTATGGATCGCTTCCACTCAA  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5