BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909736
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79800.1 | Symbols: ENODL7, AtENODL7 | early nodulin-like pr... 710 0.0
> AT1G79800.1 | Symbols: ENODL7, AtENODL7 | early nodulin-like
protein 7 | chr1:30018549-30019217 FORWARD LENGTH=579
Length=579
Score = 710 bits (384), Expect = 0.0
Identities = 446/473 (94%), Gaps = 16/473 (3%)
Strand=Plus/Plus
Query 4 ATGATGATGAT-ACTCATGAGATCTCCTTGTAATAATCTAATGA-TAATGCTGTGCATTT 61
||||||||||| | | ||||||||| |||| |||||||| | ||||||| |||||||
Sbjct 1 ATGATGATGATGA-TGATGAGATCTACTTG---TAATCTAA-CACTAATGCTCTGCATTT 55
Query 62 GTGCCCTTGTGGTGGCTTCCATGCCGGCGGAAGGTCCTAGGGTTTTCAAGGTTGGAGACG 121
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 56 GTGCCCTTGTGGTGGCTTCCATGGCGGCGGAAGGTCCTAGGGATTTCAAGGTTGGAGACG 115
Query 122 AGTTCGGGTGGAGAGTCCCACTCCAGAATGATTCAGCGCTTTACAGCCACTGGGCCAGCA 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 116 AGTTCGGGTGGAGAGTCCCACTCCAGAATGATTCAGCGGTTTACAGCCACTGGGCCAGCA 175
Query 182 GCAACCGCTTCCACATCGGTGATTCACTCTCGTTTGTGTACGACAAGGACTCAGTGGTGG 241
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 176 GCAACCGCTTCCACATCGGTGATTCACTCTCGTTTGTGTACGACAAGGACTCGGTGATGG 235
Query 242 AGGTAGACAAATGGGGTTTCTACCACTGCAACGGCAGCGATCCCATTACAGCCTTTGACA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGGTAGACAAATGGGGTTTCTACCACTGCAACGGCAGCGATCCCATTACAGCCTTTGACA 295
Query 302 ATGGAAACAGCACGTTCGACCTTGATCGTCCTGGTCTCTTCTACTTCATCAGCGGCTCCA 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATGGAAACAGCACATTCGACCTTGATCGTCCTGGTCTCTTCTACTTCATCAGCGGCTCCA 355
Query 362 ACCAGCACTGCACCAGCGGCCAGCGTCTCATCGTAGAAGTCATGCATATCCACCAACACC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACCAGCACTGCACCAGCGGCCAGCGTCTCATCGTAGAAGTCATGCATATCCACCAACACC 415
Query 422 ATGATGACCATCACGACAATGCTTCCATGCCTCCATCCATGTCGCCTCTCTCT 474
|||| |||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 416 ATGA---CCAT---GAC---GCTTCCATGCCTCCATCCATGTCGCCTCTTTCT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5