BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909750 Length=936 Score E Sequences producing significant alignments: (Bits) Value AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metac... 771 0.0 > AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411779-413554 FORWARD LENGTH=1336 Length=1336 Score = 771 bits (417), Expect = 0.0 Identities = 449/464 (97%), Gaps = 3/464 (1%) Strand=Plus/Plus Query 1 GCCGTGATCTGTGGTATTTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 60 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 348 GCCGTGATCTGTGGCATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 407 Query 61 GACGCCAAGTGCATGCGCCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 408 GACGCCAAGTGCATGCGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 467 Query 121 CTCATGCTTACC---GAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAATATGAGA 177 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 468 CTCATGCTTACCGAGGAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAACATGAGG 527 Query 178 ATGGCATTGTATTGGCTCGTACAGGGATGCACTGCAGGCGACTCCCTTGTCTTCCACTAC 237 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 528 ATGGCATTGTATTGGCTCGTACAGGGATGCACAGCAGGCGACTCACTTGTCTTCCACTAC 587 Query 238 TCTGGTCATGGTTCTCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 297 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 TCTGGTCATGGTTCGCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 647 Query 298 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 707 Query 358 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 767 Query 418 AGTGGCACCGTGCTTGATTTACCGTTCCTATGCAGAATGAACAG 461 ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct 768 AGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAG 811 Score = 431 bits (233), Expect = 6e-120 Identities = 270/286 (94%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 651 AGCGCTGTCAAAGATCACGTCTACGGGTGCTATGACGTTCTGTTTTATTCAAGCAATTGA 710 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 932 AGCGCTGTCGAAGATCACGTCTACGGGTGCTATGACTTTCTGTTTTATTCAAGCAATTGA 991 Query 711 ACGCAGCGCACAAGGCACGACCTATGGAAGCCTTTTGAATTCAATGCGCACCACAATAAG 770 |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| Sbjct 992 ACGCAGCGCACAAGGCACAACCTATGGAAGCCTTCTGAATTCTATGCGCACCACAATAAG 1051 Query 771 GAATACAGGGAATGAGGGTGGTGGTATTGGTGGTAGTGGTGGAGTTGTGACGACTGTGCT 830 ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 1052 GAATACAGGGAATGA---TGGTGGT---GGT---AGTGGTGGAGTTGTGACGACTGTGCT 1102 Query 831 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 1162 Query 891 TGCTTGTCAACCATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 936 |||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1163 TGCTTGCCAAACATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 1208 Score = 202 bits (109), Expect = 5e-51 Identities = 117/121 (97%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 493 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCTGGTTTGTGGAAAGGAACAGCT 552 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 813 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAAAGGAACTGCT 872 Query 553 GGTGGAGAAGCCATATCAATCAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 612 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 873 GGTGGAGAAGCCATTTCAATTAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 932 Query 613 G 613 | Sbjct 933 G 933 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45763307917 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5