BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909750
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metac... 771 0.0
> AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase
1 | chr1:411779-413554 FORWARD LENGTH=1336
Length=1336
Score = 771 bits (417), Expect = 0.0
Identities = 449/464 (97%), Gaps = 3/464 (1%)
Strand=Plus/Plus
Query 1 GCCGTGATCTGTGGTATTTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GCCGTGATCTGTGGCATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 407
Query 61 GACGCCAAGTGCATGCGCCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GACGCCAAGTGCATGCGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 467
Query 121 CTCATGCTTACC---GAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAATATGAGA 177
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 468 CTCATGCTTACCGAGGAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAACATGAGG 527
Query 178 ATGGCATTGTATTGGCTCGTACAGGGATGCACTGCAGGCGACTCCCTTGTCTTCCACTAC 237
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 528 ATGGCATTGTATTGGCTCGTACAGGGATGCACAGCAGGCGACTCACTTGTCTTCCACTAC 587
Query 238 TCTGGTCATGGTTCTCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TCTGGTCATGGTTCGCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 647
Query 298 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 707
Query 358 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 767
Query 418 AGTGGCACCGTGCTTGATTTACCGTTCCTATGCAGAATGAACAG 461
||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 768 AGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAG 811
Score = 431 bits (233), Expect = 6e-120
Identities = 270/286 (94%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 651 AGCGCTGTCAAAGATCACGTCTACGGGTGCTATGACGTTCTGTTTTATTCAAGCAATTGA 710
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 932 AGCGCTGTCGAAGATCACGTCTACGGGTGCTATGACTTTCTGTTTTATTCAAGCAATTGA 991
Query 711 ACGCAGCGCACAAGGCACGACCTATGGAAGCCTTTTGAATTCAATGCGCACCACAATAAG 770
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 992 ACGCAGCGCACAAGGCACAACCTATGGAAGCCTTCTGAATTCTATGCGCACCACAATAAG 1051
Query 771 GAATACAGGGAATGAGGGTGGTGGTATTGGTGGTAGTGGTGGAGTTGTGACGACTGTGCT 830
||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 1052 GAATACAGGGAATGA---TGGTGGT---GGT---AGTGGTGGAGTTGTGACGACTGTGCT 1102
Query 831 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 1162
Query 891 TGCTTGTCAACCATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 936
|||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1163 TGCTTGCCAAACATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 1208
Score = 202 bits (109), Expect = 5e-51
Identities = 117/121 (97%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 493 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCTGGTTTGTGGAAAGGAACAGCT 552
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 813 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAAAGGAACTGCT 872
Query 553 GGTGGAGAAGCCATATCAATCAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 612
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGTGGAGAAGCCATTTCAATTAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 932
Query 613 G 613
|
Sbjct 933 G 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5