BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909796
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01760.1 | Symbols: | adenosine deaminases;RNA binding;RNA ... 1884 0.0
> AT1G01760.1 | Symbols: | adenosine deaminases;RNA binding;RNA
binding;adenosine deaminases | chr1:276266-278448 REVERSE
LENGTH=1312
Length=1312
Score = 1884 bits (1020), Expect = 0.0
Identities = 1110/1155 (96%), Gaps = 0/1155 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGATTGGGGAGAGAGGGTATCAGAGAAGGTTGTTTCGGCTTACATGTCTCTC 60
|||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGGAGGATTGGGGAAAGACAGTATCAGAGAAGGTTATTTCGGCTTACATGTCTCTC 60
Query 61 CCGAAGAAGGGAAAACCTCAGGGACGTGAAGTCACCGTCCTCTCCGCTTTCCTTGTCTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CCGAAGAAGGGAAAACCTCAGGGACGTGAAGTCACCGTCCTCTCCGCTTTCCTCGTCTCT 120
Query 121 TCTCCTTCCCAAGACTTGAAAGTGATAGCGTTAGGGACGGGGACCAAGTGCGTTAGTCGG 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCTCCTTCCCAAGACCCGAAAGTGATAGCGTTAGGGACGGGGACCAAGTGCGTTAGTGGG 180
Query 181 TCGCTGCTGAGTCCCCGTGGGGACATTGTTAACGATTCTCATGCCGAAGTTGTCGCCAGA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCGCTGCTGAGTCCCCGTGGGGACATTGTGAACGATTCTCATGCCGAAGTTGTCGCCAGA 240
Query 241 AGAGCTCTCATCAGGTTCTTCTATTCCGAGATTCAGCGGATGCAATTGACTTCAGATAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGAGCTCTCATCAGGTTCTTCTATTCCGAGATTCAGCGGATGCAATTGACTTCAGGTAAG 300
Query 301 AGTAGTGAAGCCAAGCGTCAGAGACTTGATTGCGAAACAAGCTCAGTACTAGAGTCAGCA 360
|||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 301 AGTAATGAAGCCAAGCGTCAGAGAATTGATAGCGAAACAAGCTCAATACTAGAGTCAGCA 360
Query 361 GATTCAAGCTGTCCTGGACAAGTGAAATATAAGCTCAAATCTGGCTGCCACTTGCATATG 420
|||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||| ||
Sbjct 361 GATTCAAGCTGTCCTGGAGAAGTCAAATATAAGCTCAAATCTGGGTGCCTCTTGCATTTG 420
Query 421 TACATTTCTCAATTGCCATGTGGTTATGCTTCTACTAGTTCACCCTTGTATGCCCTGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACATTTCTCAATTGCCATGTGGTTATGCTTCTACTAGTTCACCCTTGTATGCCCTGAAA 480
Query 481 AAGATTCCATCAACACAAGTAGACGACTCATTTTTAGTTCAAGCTTCTGACATTGGCTCG 540
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||
Sbjct 481 AAGATTCCATCAACACAAGTAGATGACTCATTGTTAGTTCAAGCTTCTGATATTTGCTCG 540
Query 541 TCTCGGCATTCTGATGTTCCACAGATAGGTAGTAATAGCCACACAGGTAATGGCTCACAA 600
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 541 TCTCGGCATTCTGATGTTCCAGAGATAGGTAGTAATAGCAACAAAGGTAATGGCTCACAA 600
Query 601 GTAGCAGATATGGTGCAAAGAAAGCCTGGTCGTGGTGAAACGACACTCTCTGTTAGCTGT 660
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 601 GTAGCAGATATGGTGCAAAGAAAGCCTGGTCGCGGTGAAACAACACTCTCTGTTAGCTGT 660
Query 661 TCAGATAAGATAGCTCGATGGAATGTTCTTGGAGTTCAAGGGGCATTGCTTTGCCAAGTC 720
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 TCGGATAAGATAGCTCGATGGAATGTTCTTGGAGTTCAAGGGGCATTGCTTTACCAAGTC 720
Query 721 CTCCAGCCTGTTTATATCTCTACCATCACCGTTGGACAATCTCTGCACATTCCTGGCAAT 780
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 721 CTCCAGCCTGTGTATATTTCTACCATCACCGTTGGACAATCTCTGCACAGTCCTGACAAT 780
Query 781 TTTTCTTTAGCTGATCACTTGCGAAGATCTTTGTATGAGAGGATCCTCCCACTATCGGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 TTTTCTTTAGCTGATCACTTGCGAAGATCTTTGTATGAGAGGATCCTCCCATTATCGGAT 840
Query 841 GACCTTCTGACTTCCTTCCGGTTGAAAAAGCCACTGTTTTTTGTAGCTCCAGTAACACCA 900
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 841 GAACTTCTGACTTCCTTCCGTTTGAACAAGCCACTGTTTTTTGTAGCTCCAGTACCACCA 900
Query 901 TCAGAATTTCAGCATTCAGAAACTGCTCAAGCTACCTTAACATGCGGGTATTCCTTGTGT 960
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 901 TCAGAGTTTCAGCATTCAGAAACTGCGCAAGCTACTTTAACATGCGGATATTCCTTGTGT 960
Query 961 TGGAACTATTCTGGCTTACACGAAGTTATTCTTGGAACAACAGGTAGAAAGCAAGGCACA 1020
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 TGGAACTATTCTGGCTTACACGAAGTTATTCTTGGAACAACCGGTAGAAAGCAAGGCACA 1020
Query 1021 TCAGCTAAAGGAGCTCTGTATCCGTCTACTCAATCATCTATATGCAAACAGCGGTTACTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCAGCTAAAGGAGCTCTGTATCCGTCTACTCAATCATCTATATGCAAACAGCGGTTACTG 1080
Query 1081 GAGCTATTCTTGAAAGAAACTCATGGACACGAAAGGGAATCTTCCAAGTCaaaaaaaTCG 1140
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 GAGCTATTCTTGAAAGAAACTCATGGACACAAAAGGGAATCTTCCAAGTCAAAAAAATCG 1140
Query 1141 TACCGAGAACTGAAG 1155
|||||||||||||||
Sbjct 1141 TACCGAGAACTGAAG 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5