BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909803
Length=2568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01690.1 | Symbols: ATPRD3, PRD3 | putative recombination in... 2026 0.0
AT1G01695.1 | Symbols: | Phosphatidylinositol N-acetyglucosami... 784 0.0
AT4G00440.2 | Symbols: | Protein of unknown function (DUF3741)... 58.4 3e-07
> AT1G01690.1 | Symbols: ATPRD3, PRD3 | putative recombination
initiation defects 3 | chr1:249141-252462 FORWARD LENGTH=1692
Length=1692
Score = 2026 bits (1097), Expect = 0.0
Identities = 1260/1335 (94%), Gaps = 25/1335 (2%)
Strand=Plus/Plus
Query 1 ATGAATA-TACACAAAGCCTGCGATCTGAAATCTATTTCTGCCTTTCCTCCTAATTTAAG 59
||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 108 ATGAATATTA-ACAAAGCCTGCGATCTGAAATCTATTTCTGTCTTTCCTCCTAATTT--- 163
Query 60 AAGGAGATCAGCTGAACCACAACAAGCATCTCAGCAGTTTCGATCTCAACAGTCACAGCA 119
|||||||||||| ||| | | |||||||||||||||| ||||||||||||||||||||||
Sbjct 164 AAGGAGATCAGCAGAA-C-C-ACAAGCATCTCAGCAGCTTCGATCTCAACAGTCACAGCA 220
Query 120 GTCCTAT-TCTCAGGGACCTTCTTCGTCTCAGCGT-G--GTGGTGGTTTTTCTCAGATGA 175
||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 221 GTCCT-TCTCTCAGGGACCTTCTTCGTCTCAGCGTGGTTGTGGTGGTTTTTCTCAGATGA 279
Query 176 CTCAGAGTTCTATTGATGAACTCCCCATTAACGATCTGAGGTTTAGTTCTCAGGAAAGAG 235
||||||||||||| || ||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 280 CTCAGAGTTCTATCGACGAACTCCTCATTAACGATCAGAGATTTAGTTCTCAGGAAAGAG 339
Query 236 ATCCCTCTTTGAAGAAGG-T--TAGTTGCTTACCCCCAATCAATCATAAACGAGAAGATA 292
||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 340 ATCTCTCTTTGAAGAAGGTTAGTAGTTGCTTACCTCCAATCAATCATAAACGAGAAGATA 399
Query 293 GTCAGTTGGTCACATCTAGATCTTCCAGCGGTCTCACGAGAAGATGGAGTTCTGCTTCAC 352
||||||||||| | ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 400 GTCAGTTGGTCGCTTCTAGATCTTCAAGTGGTCTTTCGAGAAGATGGAGTTCTGCTTCAA 459
Query 353 TTGGAGAGTCTAAATTAGCTCAGATCAGTGAAGAGCTTGAGCAACGATTTGGGATGATGG 412
||||||||||| || | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 460 TTGGAGAGTCT-AAGT--CTCAGATCAGTGAAGAGCTTGAGCAACGGTTTGGGATGATGG 516
Query 413 AAACTTCTTTGAGCAGGTTTGCAATGATGTTGGATTCCATTCAGAGTGACATCATGCAAG 472
| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 517 AGACTTCTTTGAGCAGGTTTGGAATGATGTTGGATTCAATTCAGAGTGACATCATGCAAG 576
Query 473 CCAA-CAGAGGAACTAAAGAAGTATTTCTTGAAACTGAACGCATACAGCAAAAGTTGATT 531
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 577 CCAATC-GAGGAACTAAAGAAGTATTTCTTGAAACTGAACGCATACAGCAAAAGTTGACT 635
Query 532 CTCCAAGACACTTCACTTCAGCAGCTGATAAAGGAACAAGCCGATTCTAAAGCTAGTCTT 591
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 636 CTCCAAGACACTTCACTTCAGCAGCTGAGAAAGGAACAAGCCGATTCTAAAGCTAGTCTT 695
Query 592 GATGGAGGTGTTAAATCTATATTGGAGGAATTCAGCAAAGATCCTAATCAGGAGAAGCTA 651
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 696 GATGGAGGTGTTAAATTTATATTGGAGGAATTCAGCAAAGATCCCAATCAGGAGAAGCTA 755
Query 652 CAGAAAATCTTACTGATGCTAACAACTATCCCAGAGCAAGTAGAAACCGCTCTGCAGAAA 711
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CAGAAAATCTTACAGATGCTAACAACTATCCCAGAGCAAGTAGAAACCGCTCTGCAGAAA 815
Query 712 ATACAAAGGGAAATCTGTCACACGTTCACCAGAGAGATTCAGGTCTGGGCTAGCTTGAAG 771
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 816 ATACAAAGGGAAATCTGTCACACGTTCACCAGAGAGATTCAGGTCTTGGCTAGCTTGAGG 875
Query 772 ACGCCTGAACCAAGGGTTCAGGTTCCAACAGCACCACAAGTGAAGGCTAAGGAAAACCTG 831
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 876 ACGCCTGAACCAAGGGTTCGGGTTCCAACAGCACCACAAGTGAAGGCTAAGGAAAACCTG 935
Query 832 CCTGAGCAGCGTGGTCAAGCAGCCAAGGTTTTGACTAGCTTGAAGATGCCTGAGCCAAGA 891
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 936 CCTGAGCAGCGTGGTCAAGCGGCCAAGGTTTTGACTAGCTTGAAGATGCCTGAGCCAAGA 995
Query 892 GTTCAGGTTCCAGCAGCACCACAAGCTAAGG-AAACATTGCCTGAGCAGCGCGGTACAGC 950
||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||
Sbjct 996 GTTCAGGTTCCAGCAGCACCACAAGCTAAGGAAAAC-TTTCCTGAGCAGCGCGGTCCAGT 1054
Query 951 AGCCAAGAGCAATTCCCTTTGTAATACTATACTGAAAACTAAACAACCGCAGCTTCCAAG 1010
|||||||||||||||| |||||||||||| ||||||||| |||||||| || |||| ||
Sbjct 1055 AGCCAAGAGCAATTCCTTTTGTAATACTACACTGAAAACCAAACAACCACAATTTCCGAG 1114
Query 1011 AAAACCAAATAG-CGCATCAGCCAGAGCTGTGAAACCATATTTGTCCCCAAAGATACAAG 1069
||| |||||| | ||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1115 AAATCCAAAT-GACGCCTCAGCCAGAGCTGTAAAACCATATTTATCCCCAAAGATACAAG 1173
Query 1070 TGGGATGTTGGAAGACTGTGAAACCAGAAAAAAGCAATTTCAAGAAAAGAGCAACAAGAA 1129
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 TGGGATGTTGGAAGACGGTGAAACCAGAAAAAAGCAATTTCAAGAAAAGAGCAACAAGGA 1233
Query 1130 AGCCAGTGAAATCCGAAAGCACTCGTACGCAGTTTGAGCAATGCAGTGTTGTGATAGACT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AGCCAGTGAAATCCGAAAGCACTCGTACGCAGTTTGAGCAATGCAGTGTTGTGATAGACT 1293
Query 1190 CCGATGAAGAAGATATTGATGGAGGTTTTTCATGCCTGATCAACGAGAACACCAAAGGAG 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1294 CCGATGAAGAAGATATTGATGGAGGTTTTTCATGCCTGATCAACGAGAACACCAGAGGAA 1353
Query 1250 CTAACTTCGAATGGGACGCAGCGAAGGAAACTGAAAGGATTCTGAGGACAGCGAGGAGGA 1309
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1354 CTAACTTCGAATGGGACGCAGAGAAGGAAACTGAAAGGATTCTGAGGACAGCGAGGAGGA 1413
Query 1310 CAAAGAGGAAGTTCG 1324
|||||||||||||||
Sbjct 1414 CAAAGAGGAAGTTCG 1428
> AT1G01695.1 | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase
subunit P-related | chr1:252947-254495 FORWARD
LENGTH=1302
Length=1302
Score = 784 bits (424), Expect = 0.0
Identities = 498/532 (94%), Gaps = 11/532 (2%)
Strand=Plus/Plus
Query 2031 AGGTGAAGCAAAGATACAACCTTTGAGTAACCAATTGCAAGAAAAGAATCGTCCTATGGA 2090
||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 759 AGGTGAAGCAAAGATACAACCTTTGTGTAACCAATTGCAAGAAAAGAATCGT-C------ 811
Query 2091 TGACAAAGAATCAGTGTTTAAGTACGTAAAAGCGGTGTTGGATGCAATAGACTCAAACTG 2150
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 812 --ACAAAGAATCAGTGTTTAAGTATGTAAAAGCGGTGTTAGAGGCAATAGACTCAAACTG 869
Query 2151 GGAAGAGCTGTATCTGAAAACAGAATTCTCTGACCAGCTTCTATATCCGGCATTGATCAG 2210
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 870 GGAAGAGCTGTATCTGAAAACAGAAATCTCTGACCAGCTTCTATATCCGGCATTGATCAG 929
Query 2211 CAACATACCATTCTATCCAAATCAGCTTTGTGTTGAACATGAGCTCCTCTTCGACTGCAT 2270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CAACATACCATTCTATCCAAATCAGCTTTGTGTTGAACATGAGCTCCTCTTCGACTGCAT 989
Query 2271 CAATGAAGTTCTCTTCGAATTCTGCAGGTTTCCTCAATGGGTTTCCTTTATTGAAACCAG 2330
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 990 CAATGAAGTTCTCTTCGAATTCTGCAGGTTTCCTCAATGGGTTTCCTTTGCTGAAACCAG 1049
Query 2331 AACCCAAGTCTTGTCGTTTAGTGTTGAAAGCATTGTTCCCGAGGTTCAAGAAAAGGTTTG 2390
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GACCCAAGTCTTGCCATATAGTGTTGAAAGCATTGTTCCCGAGGTTCAAGAAAAGGTTTA 1109
Query 2391 CCGTCATCTCTTGCCAATGCAACTCCGTCGATCGTTGGAACAAAGAGTTAGAGAAGACAT 2450
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1110 TTGTCATCTCTTGCCAATGCAACTCCGTCGATCGTTGGAAGAAAGAGTTAGAGAAGATAT 1169
Query 2451 GGCTAAACACAGGAGCTGGATAGACATTAGATGTGAACTTGAGTGCATTGGCTTTGAGAC 2510
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 1170 GGCTAAACACAGGAGCTGGTTAGACATTAGATGTGACCTTGAGTGTATTGGCTTTGAGAC 1229
Query 2511 TAGCGAATTGAT-TCTGAATGAACTATTGGAACAACTCATGGTTGAGCTTGA 2561
|||||||||||| | |||||||| |||||||||| || ||| ||||||||||
Sbjct 1230 TAGCGAATTGATAT-TGAATGAATTATTGGAACAGCTGATGCTTGAGCTTGA 1280
Score = 460 bits (249), Expect = 2e-128
Identities = 292/312 (94%), Gaps = 5/312 (2%)
Strand=Plus/Plus
Query 1727 ATGATCCAAACATGGCAACGAGCAAACAGGTTCAAAGAAATCAAGAAAGGACTT-TATGG 1785
||||||||||| ||||||| ||||||||||||||||||||||| ||||||| || |||||
Sbjct 341 ATGATCCAAACTTGGCAACAAGCAAACAGGTTCAAAGAAATCACGAAAGGA-TTGTATGG 399
Query 1786 CTTCCCGAGTATTCGTCTCCTTTTAGCAGCCCGGGAAGAATATGGAAACAGAATTCAAAA 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTTCCCGAGTATTCGTCTCCTTTTAGCAGCCCGGGAAGAATATGGAAACAGAATTCAA-- 457
Query 1846 ACCGTGCTTTCGAGATCTTCTTCAGACGATTTCATGAAGTCTGAAACAATTGCAGATGAT 1905
||||||||| ||| ||||||||| | |||||||| ||||| ||||||||||||||||||
Sbjct 458 -CCGTGCTTTTGAGGTCTTCTTCATATGATTTCATCAAGTCCGAAACAATTGCAGATGAT 516
Query 1906 TCAATAACTATGAAAGAGGTAGGAACTGCTTCATCAAGTGAAGGTAGTAGTAGCCCTCTT 1965
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TCAATAACTTTGAAAGAGATAGGAACTGCTTCATCAAGTGAAGGTAGTAGTAGCCCTCTT 576
Query 1966 GTATCCAAAAACAACCAGATTGTTGATGAGATGTCAAAAGTTGCAGCTTATGGTGCAGAG 2025
|||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CTATCTAAAAGCAATCAGATTGTTGATGAGATGTCAAAAGTTGCAGCTTATGGTGCAGAG 636
Query 2026 AATGAAGGTGAA 2037
||||||||||||
Sbjct 637 AATGAAGGTGAA 648
Score = 374 bits (202), Expect = 3e-102
Identities = 311/357 (87%), Gaps = 34/357 (10%)
Strand=Plus/Plus
Query 1346 TCGAAAACCATGTCGAAGAAAAGCTTCGCTCAAATAGACAAGAGAGAGATCAGTTAGGCT 1405
||||||| ||||| ||||||||||||||||||||||| || | |||| || |||||
Sbjct 8 TCGAAAAACATGTGGAAGAAAAGCTTCGCTCAAATAG--AA-A-AGAG---AG--AGGCT 58
Query 1406 GGATATCTGtttttttCAGAAGGAAGAAGAGATCACCAC------AAGAAGTTGATAATG 1459
||||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 59 GGATATCTGGTATTTTCAGAAGGAAGAAGAGATCACCACAAGAAGAAGAAGTTGATAATG 118
Query 1460 AACATAACTCATCTAAAGATTCTCGTTTGATGGGAAGAAACAAAGCCAAGAATTTGCATT 1519
|| ||||||||||| |||||||||||||||| || | |||||||||||||||||
Sbjct 119 AAAATAACTCATCTGAAGATTCTCGTTTGAT-GG--G------AGCCAAGAATTTGCATT 169
Query 1520 TGTTTCTCTCTGAGATCATGAGAAAACTGAAACATGCAATCAGAAAGGAGAAACCGCGGT 1579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 170 TGTTTCTCTCTGAGATCATGAGAAAACTGAAACATGCAATCAGAAAGGAGAAACCG-G-- 226
Query 1580 ACGACAGGAGATTGTTAGGGAAGGAA-AAAAGCTTTCAGAAGTA-TTCGTCAACTAAAGA 1637
|| | || ||||||||||||||| || ||||||||| ||||| | || ||||||||||||
Sbjct 227 AC-A-AG-AGATTGTTAGGGAAG-AAGAAAAGCTTTGAGAAG-AGTTTGTCAACTAAAGA 281
Query 1638 TCATTTCTTTCTCGAGCGGATGACTTCAATATCTCAAAAGAGATTTAACCAAGGACA 1694
|||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||
Sbjct 282 TCATTTCTTTCTCGAGCGCATGACTTCAATATCTCAAAAGAGATTTCATCAAGAACA 338
> AT4G00440.2 | Symbols: | Protein of unknown function (DUF3741)
| chr4:193879-198579 FORWARD LENGTH=3708
Length=3708
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1629 AACTAAAGATCATTTCTTTCTCGAGCGGATG 1659
|||||||||||||||||||||||||||||||
Sbjct 1929 AACTAAAGATCATTTCTTTCTCGAGCGGATG 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127474202163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5