BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909804
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01680.1 | Symbols: ATPUB54, PUB54 | plant U-box 54 | chr1:2... 1471 0.0
> AT1G01680.1 | Symbols: ATPUB54, PUB54 | plant U-box 54 | chr1:246411-248367
REVERSE LENGTH=965
Length=965
Score = 1471 bits (796), Expect = 0.0
Identities = 886/930 (95%), Gaps = 3/930 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGACGCCATTTATGTTGCAGTGAATCAAGATGTTCGAGAAAGTaaaaaaaCTTTG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ATGGAAGACGCCATATATGTTGCAGTGAATCAAGATGTTCGAGAAAGTAAAAAAACTTTG 98
Query 61 TTATGGACATTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCA 120
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TTATGGGCTTTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCA 158
Query 121 TTTTCGTTGACCACTTCCTCAAGTAGGTTTGAACAAAGTGAGATCGATGCAATCCAAGAT 180
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 159 TTTTCGTTGACCACTTCTTCAAGTAGGCTTGAACAAAGTGAGATCGATGCAATCCAAGAT 218
Query 181 TCAGAACTGAATACTTCAGTTAATAGCCTCTACAAGTACCGTGATATCTGCATAAACAAA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 219 TCAGAACTGAATACTTCAGTAAATAGCCTCTACAAGTACCGTGATATCTGCATAAAC-AA 277
Query 241 GGAGGGGTTAATGAAGAAGATGTGGATACATCATTGATCTCAGGACATGATGTGGGGGAA 300
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 278 --AGGGGTTAATGAAAAAGATGTGGATACATCAATGATCTCAGGACATGATGTGGGGGAA 335
Query 301 GGGATTGTGGAACTCATGTATCAAAACAATATCACGAAGCTGGTTATGGGAGCAGCAGCT 360
||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||
Sbjct 336 GGGATTGTGGAACTCATCTATCAAAACATTATCACGAACCTCGTTATGGGAGCAGCAGCT 395
Query 361 GATTCTCACTATTCCAGGGGAATGTCCATCACATCTAGGAAAGCAGAGTATGTGAGTCAA 420
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 396 GATCCTCACTATTCCAGGGGAATGTCTATCACATCTAGGAAAGCAGAGTATGTGAGTCAA 455
Query 421 CATGCACCTCGTAGCTGTAAAATGTGGTTCATCTGCAAGGGGAAACTCATCAAGAAAAGA 480
|||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 456 CATGCACCTCATAGCTGTAAAATATGGTTCATCTGCAAGGGGAAACTCATCAAGCAAAGA 515
Query 481 GAAAGAAGTTTCGACATCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCT 540
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GAAAGAAGTTTCTACCTCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCT 575
Query 541 GAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAATATGAAACAGAGTCACCTAAA 600
||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||
Sbjct 576 GAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAAGAGGAACCCGAGTCACCTAAA 635
Query 601 GAACATCCAGTTTGGATACTAGAACCCGAGGAATCACCAAAGAAAGGAAAGAAGGAACCT 660
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 636 GAACATCCAGGTTGGATACTAGAACCTGAGGAATCACCAAAGAAAGGAAGGAAGGAAACT 695
Query 661 GCAGAGAAGTCAAAAAGCAATGGGAGCGATGAAGACTCACGCCTCGAAGATTTCAAGTGT 720
|||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||
Sbjct 696 ATAGAGAAATCAAAAAGCAATGAGAGCGATGAAGACCCACGTCTCGAAGATTTCAAGTGT 755
Query 721 CCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAG 815
Query 781 GCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCGCCAAAGACAAACAAG 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 816 GCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCTCCAAAGACAAACAAG 875
Query 841 CCGCTTGAGAATCATAATCTTGTTCCAAATCACACTCTTCGTATAATCATTAAAGACTGG 900
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 876 CCGCTTGAGAATCACAATCTCGTTCCAAATCACACTCTTCGTATAATCATAAAAGATTGG 935
Query 901 CTCGAGAAGAACCCAAATCATAAACATTGA 930
|| ||||||||||||||| |||||| ||||
Sbjct 936 CTGGAGAAGAACCCAAATTATAAACGTTGA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5