BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909816
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01570.1 | Symbols: | Protein of unknown function (DUF604) ... 2218 0.0
> AT1G01570.1 | Symbols: | Protein of unknown function (DUF604)
| chr1:205176-207435 FORWARD LENGTH=1437
Length=1437
Score = 2218 bits (1201), Expect = 0.0
Identities = 1368/1447 (95%), Gaps = 17/1447 (1%)
Strand=Plus/Plus
Query 94 ATGTCGAAGCTAATCTTCTTAATTCTCGCCATTCTTTTCTCTCTTCAATTCGTTTTCTAC 153
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCGAGGCTAATCTTCTTAATTCTCGCCATTCTCTTCTCTCTTCAATTCGTTTTCTAC 60
Query 154 CCTTTAAATTTCATCTCCTCTTCTTCTGAACCTCGATCTCTGATCAAATTCTCTGTTTCA 213
||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 61 CCTTTAAATTTCATCTCCTCTTCTTCTCAA---C---CTCTGATCAAATTCTCTGTTTCA 114
Query 214 CCCGTCGGATCCGGATCCGGGTCGGTTCATGAACCGGAACAAACCGAACTCAAGCACGTC 273
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 115 CCCGTCGTATCCGGATCCGGGTCGGTTCATGAACCGGACCAAACCGAACTCAAGCACGTC 174
Query 274 GTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCG-AAGAGACTACGTGAAGCT 332
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 175 GTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCGTAA-AGACTACGTGAAGCT 233
Query 333 CTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTGGACCAACACATTGACCA 392
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 234 CTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTAGACCAACACATTAACCA 293
Query 393 AAACGACAACGTTTCGAACACATTACCTCCGCTCAGAATCTCCTCCGACACGTCGAGGTT 452
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 294 AAACGACAACGTTTCGAAAACATTACCTCCGATCAGAATCTCCTCCGACACGTCTAGGTT 353
Query 453 TAAGTATC-GATACCCGAAGGGACTCCGATCGGCGATAAGAATCACGAGAATCGTCTCGG 511
| |||| | ||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 354 TCAGTA-CAGATACCCAAAGGGTCTCCGATCGGCGATCAGAATCACGAGAATCGTCTCGG 412
Query 512 AGACAGTGAGGCTCTTGAACGGAACAGAGTCT-GAGAAAAACGTGAGGTGGATTGTGATG 570
|||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 413 AGACGGTGAGGCTGTTGAACGGAACAGAGT-TGGAGAAAAACGTGAGGTGGATTGTGATG 471
Query 571 GGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTTAAGGTTTTGAGAAAGTACGAT 630
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 472 GGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTCAAGGTTTTGAGAAAGTACGAT 531
Query 631 CATAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATTCAGAATCTGAAGTTC 690
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 532 CACAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATACAGAATCTCAAGTTC 591
Query 691 TCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCA 651
Query 751 TTGGAGAAAATGCAAGATCGTTGTATTCAGAGATATGCGGAATTGTACGGCTCCGATGAT 810
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 652 TTAGAGAAAATGCAAGATCGTTGTATTCAGAGATATTCGGAATTGTACGGCTCCGATGAT 711
Query 811 CGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAAGAAGTTGGCTTCCAT 870
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 712 CGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAGGAAGTTGGCTTCCAT 771
Query 871 CAGATTGATTTATATGGGAAACTTCTAGGCCTGCTATCGGCCCATCCATTGGCTCCGCTA 930
|||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| |||
Sbjct 772 CAGATTGATTTATACGGGAAACTTCTGGGCCTATTATCGGCCCATCCACTGGCTCCTCTA 831
Query 931 GTCTCGATCCATCATTTAGACTTAGTGGATCCAGTATTCCCAAATATGGGCCGAGTCAAC 990
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 832 GTATCGATCCACCATTTAGACTTAGTGGATCCAGTATTCCCAAACATGGGCCGAGTCAAC 891
Query 991 GCCATGAGACGTTTCATGGTCTCCGCAAAGCTGGACTCAGCGAGCCTCGCGCAGCAGTCA 1050
||||||||||||||||||||| ||||||| || |||||| |||||||||||||||| |||
Sbjct 892 GCCATGAGACGTTTCATGGTCCCCGCAAAACTCGACTCACCGAGCCTCGCGCAGCAATCA 951
Query 1051 ATCTGCTACGACGTGGACCACCGATGGACCGTGTCTGTCTCGTGGGGTTACACAGTTCAG 1110
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 952 ATCTGCTACGACGCGGACCACCGATGGACCGTGTCTGTCTCGTGGGGATACACAGTCCAG 1011
Query 1111 ATCACACGTGGCGTGTTGTCAGCTAAAGAGATGGTGATCCCCACGCGCACGTTCATCGAC 1170
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1012 ATCATACGTGGCGTGTTGTCAGCTAGAGAGATGGTGATCCCCACGCGCACGTTCATCGAT 1071
Query 1171 TGGTACAAACAAGCTGACGAGAGAAGCTACGCTTTTAACACGCGTCC-AGTCGCCAAGAG 1229
||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||| ||
Sbjct 1072 TGGTACAAACAGGCAGACGAAAGAAGCTATGCTTTTAACACGCGTCCTA-TCGCCAAAAG 1130
Query 1230 CGCGTGTCAGCGTCCGCGAGTGTATTACCTATCCAACGCGCTTCCTGACTTGGCATTGCA 1289
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1131 CGCGTGTCAGCGTCCGCGAGTGTATTACCTGTCCAACGCGCTTCCTGACTTGGCTTTGCG 1190
Query 1290 TAGAACTGCTAGTGAGTACGT--GA-GGTATGACATGTGGGAGCCTGAATGTGACTGGGA 1346
||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||
Sbjct 1191 TAGAACTGCTAGTGAATACGTGAGATGGTACGACATGTGGGAGCCTGAATGTGACTGGGA 1250
Query 1347 TATGTCGGATCCTTCGGAAATTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAG 1406
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TATGTCGGATCCTTCGGAATTTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAG 1310
Query 1407 ATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCTATGAAGAAGAA 1466
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 1311 ATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCCACGACGAAGAA 1370
Query 1467 TGGGACGATGGTAATCGATGTAGGAACTTGTAAAGATGATGAATTTGTTGAATTCCCTGT 1526
|||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 1371 TGGGACTATGGTAATCGATGTAGGAGCTTGTAAAGATGATGAATTTGCTGAATTCCTTGT 1430
Query 1527 GAAATAG 1533
||||||
Sbjct 1431 CAAATAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5