BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg909820 Length=744 Score E Sequences producing significant alignments: (Bits) Value AT1G01530.1 | Symbols: AGL28 | AGAMOUS-like 28 | chr1:192640-19... 787 0.0 AT1G65360.1 | Symbols: AGL23 | AGAMOUS-like 23 | chr1:24281337-... 582 1e-165 > AT1G01530.1 | Symbols: AGL28 | AGAMOUS-like 28 | chr1:192640-193670 REVERSE LENGTH=752 Length=752 Score = 787 bits (426), Expect = 0.0 Identities = 650/756 (86%), Gaps = 24/756 (3%) Strand=Plus/Plus Query 1 ATGGCGAGAAAGAATCTTGGCCGTAGAAAAATAGAGATT-GTGAAAATGACCAACGAATC 59 |||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||| Sbjct 9 ATGGCGAGAAAGAATCTTGGTCGTAGAAAAATAGAG-TTGGTAAAAATGACCAACGAATC 67 Query 60 AAACCTTCAAGTTACATTTTCAAAGAGAAGATCTGGTCTTTTTAAGAAAGCCAGTGAACT 119 ||||||||||||||| |||||||| ||||||||||||||||| || |||| ||||||||| Sbjct 68 AAACCTTCAAGTTACGTTTTCAAAAAGAAGATCTGGTCTTTTCAAAAAAGGCAGTGAACT 127 Query 120 TTGCACGTTATGTGATGCAGAAATTGCGATTATCGTCTTTTCACCATCTGGAAAAGTATA 179 |||||| |||||||| || ||||||||||| ||||| |||||||| || ||||||| ||| Sbjct 128 TTGCACCTTATGTGACGCGGAAATTGCGATAATCGTGTTTTCACCCTCGGGAAAAGCATA 187 Query 180 CTCTTTTGGTCATCCAAATGTTAATGTTTTACTTGATCAAT-TTTCAGAACGTGTTCTAA 238 |||||||||||||||||||||||| |||||||| || | ||| || |||||| ||| Sbjct 188 CTCTTTTGGTCATCCAAATGTTAACAAGTTACTTGACCACTCTTT-AGGGCGTGTTATAA 246 Query 239 GACAAAACAACACAAACCTTGATGAAAGCCACACAAAGCTCCATATTCAAATGCTCAATC 298 |||| |||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| Sbjct 247 GACACAACAACACAAACTTTGCTGAAAGCCGCACAAAGCTCCGTATTCAAATGCTCAATG 306 Query 299 AGTCCTTAACTGAGGCGATGGCTgaaaaagaaaaagaacaa-aggaaaaaggagtggcta 357 |||| |||||||||| ||||||||||||||||||||||||| || | ||| ||| || Sbjct 307 AGTCTTTAACTGAGGTGATGGCTGAAAAAGAAAAAGAACAAGAG-ACCAAGCAGTCAATA 365 Query 358 gtccaaaatgaaagaga-aatcaagaaCGTTGAGGAGTGGTGGACAAACTCTCTAAAAGA 416 ||||||||||||||||| || |||| ||| |||| ||||||||| ||||||| || ||| Sbjct 366 GTCCAAAATGAAAGAGAGAA-CAAGGACGCTGAGAAGTGGTGGAGGAACTCTCCAACAGA 424 Query 417 ACTCAACCTAACTCAATTAACTTCCATGAAACATGCTCTTGAAGATTTGAAGAAGGAAGT 476 ||||||| || |||||| ||||||||||||| || |||||||| ||||||||||||||| Sbjct 425 ACTCAACTTAGCTCAATCAACTTCCATGAAATGTGATCTTGAAGCTTTGAAGAAGGAAGT 484 Query 477 TAATGAGAGAGCCTCTCTGTTTCATCA-ATCAAAC-TCAAACTTCTACGTAGGAAGTTCT 534 | |||| | || | ||| ||||||| | |||| | ||||||||| || ||||||||| Sbjct 485 TGATGAAAAAGTCGCTCAACTTCATCATAG-AAACCT-AAACTTCTATGTTGGAAGTTCT 542 Query 535 AGCAATGCTGCTGCTCCAG-AGGCTGTGAATGGTGGTAATATCTCCATAAACCAGGGTTT 593 ||||||| ||||||||||| || |||| | ||||||||||||||||| |||||| ||||| Sbjct 543 AGCAATGTTGCTGCTCCAGCAG-CTGTTAGTGGTGGTAATATCTCCACAAACCATGGTTT 601 Query 594 CTTT-ACTCAAAATGGAATGC-CTACT-CATGTTCAAACTCTGCCGTTTGGATTTAATGT 650 |||| | |||||| |||| | ||||| | || || ||| |||||||||||||||||||| Sbjct 602 CTTTGA-TCAAAACGGAAA-CTCTACTTC-TGCTCCAACACTGCCGTTTGGATTTAATGT 658 Query 651 TATGAATCGCACCCCAACGGGGTACAACAATTGCCAAATCCAAAACCAGGAG-TTCAAAC 709 |||||||||||| ||| | |||||||||| || |||| |||||||||||||| || |||| Sbjct 659 TATGAATCGCACACCAGCTGGGTACAACAGTTACCAACTCCAAAACCAGGAGGTT-AAAC 717 Query 710 AAGTTCATCCTTATTAT-GGGCCTCGTTACTATTAG 744 |||| |||||| | ||| |||| ||||||||||||| Sbjct 718 AAGTCCATCCTCAGTATTGGGC-TCGTTACTATTAG 752 > AT1G65360.1 | Symbols: AGL23 | AGAMOUS-like 23 | chr1:24281337-24282151 FORWARD LENGTH=681 Length=681 Score = 582 bits (315), Expect = 1e-165 Identities = 564/682 (83%), Gaps = 26/682 (4%) Strand=Plus/Plus Query 1 ATGGCGAGAAAGAA-TCTTGGCCGTAGAAAAATAGAGATTGTGAAAATGACCAACGAATC 59 |||| || ||| || |||||| |||||||| ||||||| ||||||||||| || ||||| Sbjct 1 ATGGTGA-AAAAAACTCTTGGTCGTAGAAAGGTAGAGATAGTGAAAATGACTAAGGAATC 59 Query 60 AAACCTTCAAGTTACATTTTCAAAGAGAAGATCTGGTCTTTTTAAGAAAGCCAGTGAACT 119 |||||||||||| |||||||| ||||||| | |||||||||||||||| || |||||| | Sbjct 60 AAACCTTCAAGTCACATTTTCCAAGAGAAAAGCTGGTCTTTTTAAGAAGGCTAGTGAATT 119 Query 120 TTGCACGTTATGTGATGCAGAAATTGCGATTATCGTCTTTTCACCATCTGGAAAAGTATA 179 |||||| |||||||||||| |||||||||| ||||| ||||||||| |||||||||||| Sbjct 120 TTGCACATTATGTGATGCAAAAATTGCGATGATCGTGTTTTCACCAGCTGGAAAAGTATT 179 Query 180 CTCTTTTGGTCATCCAAATGTTAATGTTTTACTTGATCAATTTTC-AGAACGTGTTCTAA 238 ||||||||||||||||||||| ||||| | ||||| | | |||| || ||||| || Sbjct 180 TTCTTTTGGTCATCCAAATGTTGATGTTCTGCTTGA-CCACTTTCGAGGGTGTGTTGTAG 238 Query 239 GACAAAACAACACAAACCTTGATGAAAGCCACACAAAGCTCCATATTCAAATGCTCAATC 298 |||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| | Sbjct 239 GACACAACAACACAAACCTTGATGAAAGCTACACAAAGCTTCATGTTCAAATGCTCAA-C 297 Query 299 -AGTCCTTA-ACTGAGGCGATGGCTgaaaaagaaaaagaacaaaggaaaaaggagtggct 356 | ||| || ||||||| || ||| ||| |||||||||||||| ||| ||| ||| || Sbjct 298 AAATCC-TACACTGAGGTGAAGGCGGAAGTAGAAAAAGAACAAAAGAATAAGCAGTCGC- 355 Query 357 agtc-caaaatgaaagagaaatc-aagaaCGTTGAGGAGTGGTGGACAAACTCTCTAAAA 414 | | |||||||||||||||| | || |||| |||||||||||||| || |||| | | Sbjct 356 GGGCTCAAAATGAAAGAGAAAACGAA-AACGCTGAGGAGTGGTGGAGTAAGTCTCCATTA 414 Query 415 GAACTCAACCTAACTCAATTAACTTCCATGAAACATGCTCTTGAAGATTTGAAGAAGGA- 473 ||||||||| ||| ||||| ||| | |||| || || |||| ||||||||||||| || Sbjct 415 GAACTCAACTTAAGTCAATCAACCTGTATGATACGTGTTCTTAAAGATTTGAAGAA-GAT 473 Query 474 AGTTAATGAGAGAGC-CTCTCTGTT--T-CATCAATCAAACTCAAACTTCTACGTAGGAA 529 |||| |||| | ||| | || || | |||||| ||||| |||||||||| || |||| Sbjct 474 AGTTGATGAAAAAGCAAT-TCAATTAATCCATCAAACAAACCCAAACTTCTATGTTGGAA 532 Query 530 GTTCTAGCAATGCTGCTGCTCCAG-AGGCTGTGAATGGTGGTAATATCTCCATAAACCAG 588 |||||||||||||||||||||||| | |||| | ||||||||||||||||| ||||||| Sbjct 533 GTTCTAGCAATGCTGCTGCTCCAGCAA-CTGTTAGTGGTGGTAATATCTCCACAAACCAG 591 Query 589 GGTTTCTTT-ACTCAAAATGGAATGCCTACTCATG-T--TCAAACTCTGCCGTTTGGATT 644 || |||||| | |||||| |||||| | ||| || | |||||| || | ||||||||| Sbjct 592 GGGTTCTTTGA-TCAAAACGGAATGACGACTAATCCTACTCAAACACTTCTGTTTGGATT 650 Query 645 TAATGTTATGAATCGCACCCCA 666 | || ||||||||||||| ||| Sbjct 651 TGATATTATGAATCGCACACCA 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36118351693 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5