BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909820
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01530.1 | Symbols: AGL28 | AGAMOUS-like 28 | chr1:192640-19... 787 0.0
AT1G65360.1 | Symbols: AGL23 | AGAMOUS-like 23 | chr1:24281337-... 582 1e-165
> AT1G01530.1 | Symbols: AGL28 | AGAMOUS-like 28 | chr1:192640-193670
REVERSE LENGTH=752
Length=752
Score = 787 bits (426), Expect = 0.0
Identities = 650/756 (86%), Gaps = 24/756 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAGAAAGAATCTTGGCCGTAGAAAAATAGAGATT-GTGAAAATGACCAACGAATC 59
|||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct 9 ATGGCGAGAAAGAATCTTGGTCGTAGAAAAATAGAG-TTGGTAAAAATGACCAACGAATC 67
Query 60 AAACCTTCAAGTTACATTTTCAAAGAGAAGATCTGGTCTTTTTAAGAAAGCCAGTGAACT 119
||||||||||||||| |||||||| ||||||||||||||||| || |||| |||||||||
Sbjct 68 AAACCTTCAAGTTACGTTTTCAAAAAGAAGATCTGGTCTTTTCAAAAAAGGCAGTGAACT 127
Query 120 TTGCACGTTATGTGATGCAGAAATTGCGATTATCGTCTTTTCACCATCTGGAAAAGTATA 179
|||||| |||||||| || ||||||||||| ||||| |||||||| || ||||||| |||
Sbjct 128 TTGCACCTTATGTGACGCGGAAATTGCGATAATCGTGTTTTCACCCTCGGGAAAAGCATA 187
Query 180 CTCTTTTGGTCATCCAAATGTTAATGTTTTACTTGATCAAT-TTTCAGAACGTGTTCTAA 238
|||||||||||||||||||||||| |||||||| || | ||| || |||||| |||
Sbjct 188 CTCTTTTGGTCATCCAAATGTTAACAAGTTACTTGACCACTCTTT-AGGGCGTGTTATAA 246
Query 239 GACAAAACAACACAAACCTTGATGAAAGCCACACAAAGCTCCATATTCAAATGCTCAATC 298
|||| |||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 247 GACACAACAACACAAACTTTGCTGAAAGCCGCACAAAGCTCCGTATTCAAATGCTCAATG 306
Query 299 AGTCCTTAACTGAGGCGATGGCTgaaaaagaaaaagaacaa-aggaaaaaggagtggcta 357
|||| |||||||||| ||||||||||||||||||||||||| || | ||| ||| ||
Sbjct 307 AGTCTTTAACTGAGGTGATGGCTGAAAAAGAAAAAGAACAAGAG-ACCAAGCAGTCAATA 365
Query 358 gtccaaaatgaaagaga-aatcaagaaCGTTGAGGAGTGGTGGACAAACTCTCTAAAAGA 416
||||||||||||||||| || |||| ||| |||| ||||||||| ||||||| || |||
Sbjct 366 GTCCAAAATGAAAGAGAGAA-CAAGGACGCTGAGAAGTGGTGGAGGAACTCTCCAACAGA 424
Query 417 ACTCAACCTAACTCAATTAACTTCCATGAAACATGCTCTTGAAGATTTGAAGAAGGAAGT 476
||||||| || |||||| ||||||||||||| || |||||||| |||||||||||||||
Sbjct 425 ACTCAACTTAGCTCAATCAACTTCCATGAAATGTGATCTTGAAGCTTTGAAGAAGGAAGT 484
Query 477 TAATGAGAGAGCCTCTCTGTTTCATCA-ATCAAAC-TCAAACTTCTACGTAGGAAGTTCT 534
| |||| | || | ||| ||||||| | |||| | ||||||||| || |||||||||
Sbjct 485 TGATGAAAAAGTCGCTCAACTTCATCATAG-AAACCT-AAACTTCTATGTTGGAAGTTCT 542
Query 535 AGCAATGCTGCTGCTCCAG-AGGCTGTGAATGGTGGTAATATCTCCATAAACCAGGGTTT 593
||||||| ||||||||||| || |||| | ||||||||||||||||| |||||| |||||
Sbjct 543 AGCAATGTTGCTGCTCCAGCAG-CTGTTAGTGGTGGTAATATCTCCACAAACCATGGTTT 601
Query 594 CTTT-ACTCAAAATGGAATGC-CTACT-CATGTTCAAACTCTGCCGTTTGGATTTAATGT 650
|||| | |||||| |||| | ||||| | || || ||| ||||||||||||||||||||
Sbjct 602 CTTTGA-TCAAAACGGAAA-CTCTACTTC-TGCTCCAACACTGCCGTTTGGATTTAATGT 658
Query 651 TATGAATCGCACCCCAACGGGGTACAACAATTGCCAAATCCAAAACCAGGAG-TTCAAAC 709
|||||||||||| ||| | |||||||||| || |||| |||||||||||||| || ||||
Sbjct 659 TATGAATCGCACACCAGCTGGGTACAACAGTTACCAACTCCAAAACCAGGAGGTT-AAAC 717
Query 710 AAGTTCATCCTTATTAT-GGGCCTCGTTACTATTAG 744
|||| |||||| | ||| |||| |||||||||||||
Sbjct 718 AAGTCCATCCTCAGTATTGGGC-TCGTTACTATTAG 752
> AT1G65360.1 | Symbols: AGL23 | AGAMOUS-like 23 | chr1:24281337-24282151
FORWARD LENGTH=681
Length=681
Score = 582 bits (315), Expect = 1e-165
Identities = 564/682 (83%), Gaps = 26/682 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAGAAAGAA-TCTTGGCCGTAGAAAAATAGAGATTGTGAAAATGACCAACGAATC 59
|||| || ||| || |||||| |||||||| ||||||| ||||||||||| || |||||
Sbjct 1 ATGGTGA-AAAAAACTCTTGGTCGTAGAAAGGTAGAGATAGTGAAAATGACTAAGGAATC 59
Query 60 AAACCTTCAAGTTACATTTTCAAAGAGAAGATCTGGTCTTTTTAAGAAAGCCAGTGAACT 119
|||||||||||| |||||||| ||||||| | |||||||||||||||| || |||||| |
Sbjct 60 AAACCTTCAAGTCACATTTTCCAAGAGAAAAGCTGGTCTTTTTAAGAAGGCTAGTGAATT 119
Query 120 TTGCACGTTATGTGATGCAGAAATTGCGATTATCGTCTTTTCACCATCTGGAAAAGTATA 179
|||||| |||||||||||| |||||||||| ||||| ||||||||| ||||||||||||
Sbjct 120 TTGCACATTATGTGATGCAAAAATTGCGATGATCGTGTTTTCACCAGCTGGAAAAGTATT 179
Query 180 CTCTTTTGGTCATCCAAATGTTAATGTTTTACTTGATCAATTTTC-AGAACGTGTTCTAA 238
||||||||||||||||||||| ||||| | ||||| | | |||| || ||||| ||
Sbjct 180 TTCTTTTGGTCATCCAAATGTTGATGTTCTGCTTGA-CCACTTTCGAGGGTGTGTTGTAG 238
Query 239 GACAAAACAACACAAACCTTGATGAAAGCCACACAAAGCTCCATATTCAAATGCTCAATC 298
|||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |
Sbjct 239 GACACAACAACACAAACCTTGATGAAAGCTACACAAAGCTTCATGTTCAAATGCTCAA-C 297
Query 299 -AGTCCTTA-ACTGAGGCGATGGCTgaaaaagaaaaagaacaaaggaaaaaggagtggct 356
| ||| || ||||||| || ||| ||| |||||||||||||| ||| ||| ||| ||
Sbjct 298 AAATCC-TACACTGAGGTGAAGGCGGAAGTAGAAAAAGAACAAAAGAATAAGCAGTCGC- 355
Query 357 agtc-caaaatgaaagagaaatc-aagaaCGTTGAGGAGTGGTGGACAAACTCTCTAAAA 414
| | |||||||||||||||| | || |||| |||||||||||||| || |||| | |
Sbjct 356 GGGCTCAAAATGAAAGAGAAAACGAA-AACGCTGAGGAGTGGTGGAGTAAGTCTCCATTA 414
Query 415 GAACTCAACCTAACTCAATTAACTTCCATGAAACATGCTCTTGAAGATTTGAAGAAGGA- 473
||||||||| ||| ||||| ||| | |||| || || |||| ||||||||||||| ||
Sbjct 415 GAACTCAACTTAAGTCAATCAACCTGTATGATACGTGTTCTTAAAGATTTGAAGAA-GAT 473
Query 474 AGTTAATGAGAGAGC-CTCTCTGTT--T-CATCAATCAAACTCAAACTTCTACGTAGGAA 529
|||| |||| | ||| | || || | |||||| ||||| |||||||||| || ||||
Sbjct 474 AGTTGATGAAAAAGCAAT-TCAATTAATCCATCAAACAAACCCAAACTTCTATGTTGGAA 532
Query 530 GTTCTAGCAATGCTGCTGCTCCAG-AGGCTGTGAATGGTGGTAATATCTCCATAAACCAG 588
|||||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||
Sbjct 533 GTTCTAGCAATGCTGCTGCTCCAGCAA-CTGTTAGTGGTGGTAATATCTCCACAAACCAG 591
Query 589 GGTTTCTTT-ACTCAAAATGGAATGCCTACTCATG-T--TCAAACTCTGCCGTTTGGATT 644
|| |||||| | |||||| |||||| | ||| || | |||||| || | |||||||||
Sbjct 592 GGGTTCTTTGA-TCAAAACGGAATGACGACTAATCCTACTCAAACACTTCTGTTTGGATT 650
Query 645 TAATGTTATGAATCGCACCCCA 666
| || ||||||||||||| |||
Sbjct 651 TGATATTATGAATCGCACACCA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5