BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909838
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01380.1 | Symbols: ETC1 | Homeodomain-like superfamily prot... 438 9e-123
> AT1G01380.1 | Symbols: ETC1 | Homeodomain-like superfamily protein
| chr1:147153-147942 FORWARD LENGTH=568
Length=568
Score = 438 bits (237), Expect = 9e-123
Identities = 247/252 (98%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1 ATGGATACGCAGCGTAAGTCGAAGCATCTCAAGACCAATCCAACCACTGTTGCCTCTTCT 60
||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 115 ATGAATACGCAGCGTAAGTCGAAGCATCTTAAGACCAATCCAACCATTGTTGCCTCTTCT 174
Query 61 TCTGAAGAAGTGAGCAGTCTTGAGTGGGAAGAAATAGCAATGGCTCAAGAAGAAGAGGAT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 175 TCTGAAGAAGTGAGCAGTCTTGAGTGGGAAGAAATAGCAATGGCTCAGGAAGAAGAGGAT 234
Query 121 TTGATTTGCAGGATGTATAAGCTTGTCGGTGAAAGGTGGGATTTAATAGCTGGGAGGATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTGATTTGCAGGATGTATAAGCTTGTCGGTGAAAGGTGGGATTTAATAGCTGGGAGGATT 294
Query 181 CCAGGAAGAACAGCAGAAGAGATTGAGAGGTTTTGGGTGATGAAGAATCATCGGAGATCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 295 CCAGGAAGAACAGCAGAAGAGATTGAGAGGTTTTGGGTGATGAAGAATCATCGAAGATCT 354
Query 241 CAATTACGTTGA 252
||||||||||||
Sbjct 355 CAATTACGTTGA 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5