BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909839

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01370.1 | Symbols: HTR12, CENH3 | Histone superfamily prote...   490    6e-138


> AT1G01370.1 | Symbols: HTR12, CENH3 | Histone superfamily protein 
| chr1:143564-145650 FORWARD LENGTH=909
Length=909

 Score =  490 bits (265),  Expect = 6e-138
 Identities = 299/316 (95%), Gaps = 0/316 (0%)
 Strand=Plus/Plus

Query  231  GAATAAGCCTTATCGATACAAGCCAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCA  290
            ||| ||| |||||||||||| |||||||||||||||||| | ||||||||| ||||||||
Sbjct  344  GAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTTCCA  403

Query  291  GAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAAC  350
            |||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct  404  GAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTATAAC  463

Query  351  TCATGCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCA  410
             |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  464  CCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCTTCA  523

Query  411  AGAGGCTGCAGAAGATTACTTGGTTGGATTGTTCTCAGATTCAATGCTCTGTGCTATCCA  470
            |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  524  AGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCA  583

Query  471  TGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAA  530
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  584  TGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGGAAA  643

Query  531  AGGCAGACCATGGTGA  546
            ||||||||||||||||
Sbjct  644  AGGCAGACCATGGTGA  659


 Score =  165 bits (89),  Expect = 4e-40
 Identities = 107/116 (92%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  117  TGCTTCATCTTCTCAAGCGGCAGGTCCGACGACGACCCCGACAACAAGAGGCACTGAAGG  176
            ||||||||||||||| ||||||||||| || |||||||||||||  ||||||  ||||||
Sbjct  185  TGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGACCCCGACAAGGAGAGGCGGTGAAGG  244

Query  177  TGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTGGAAGGA  232
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  245  TGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTACAAGGA  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5