BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909840
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of AB... 904 0.0
AT4G01026.1 | Symbols: PYL7, RCAR2 | PYR1-like 7 | chr4:447052-... 483 1e-135
> AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of
ABA receptor 1 | chr1:141971-143183 FORWARD LENGTH=1000
Length=1000
Score = 904 bits (489), Expect = 0.0
Identities = 545/573 (95%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 1 ATGATGGACGGCGTTGGAGGCGGCACGGCGATGTACGGAGGTCTCGAGACGATGCAATAC 60
|||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 168 ATGATGGACGGCGTTGAAGGCGGCACGGCGATGTACGGTGGTCTCGAGACGGTGCAATAC 227
Query 61 GTACGGACGCATCATCAACATCACTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAA 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 228 GTACGGACGCATCATCAACATCTGTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAA 287
Query 121 CACATCAAAGCTCCTGTTCATCTCGTTTGGTCACTTGTGCGGAGATTTGATCAGCCGCAG 180
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 288 CACATCAAAGCTCCTCTTCATCTCGTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAG 347
Query 181 AAATACAAACCATTTGTGAGTAGATGCAGAGTAATCGGTGATCCTGAAATCGGGAGTCTT 240
||||||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||
Sbjct 348 AAATACAAACCGTTTGTGAGCAGATGTACAGTAATCGGTGATCCTGAAATCGGCAGTCTT 407
Query 241 AGAGAAGTCAATGTTAAATCTGGTCTTCCTGCAACAACAAGTACTGAGAGATTAGAACTT 300
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 408 AGAGAAGTCAATGTTAAATCTGGTCTTCCTGCAACAACATCTACTGAGAGATTAGAACTT 467
Query 301 CTTGATGATGAAGAACATATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAG 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CTTGATGATGAAGAACACATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAG 527
Query 361 AATTACTCGTCGATTGTGACTGTGCATCCGGAGATAATCGAGGGAAGAGCTGGAACAATG 420
||||||||||||||| |||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 528 AATTACTCGTCGATTTTGACGGTTCATCCGGAGATAATCGAGGGAAGAGCAGGAACGATG 587
Query 421 GTGATTGAATCGTTTGTAGTTGATGTTCCTGAAGGTAACACAAAGGAAGAGACTTGCTAC 480
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 588 GTGATTGAATCGTTTGTAGTTGATGTTCCTCAAGGTAACACAAAGGATGAGACTTGCTAC 647
Query 481 TTTGTTGAAGTACTTATCAGATGTAATCTCAAGTCATTAGCAGATGTTTCTGAAAGATTG 540
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 648 TTTGTTGAAGCACTTATCAGATGTAATCTCAAGTCACTAGCAGATGTTTCTGAAAGATTG 707
Query 541 GCTTCTCAGGACATAACTCAATTCACTACATAA 573
|||||||||||||| ||||| | |||||||||
Sbjct 708 GCTTCTCAGGACATTACTCAGTGAACTACATAA 740
> AT4G01026.1 | Symbols: PYL7, RCAR2 | PYR1-like 7 | chr4:447052-448511
FORWARD LENGTH=1166
Length=1166
Score = 483 bits (261), Expect = 1e-135
Identities = 454/545 (83%), Gaps = 21/545 (4%)
Strand=Plus/Plus
Query 30 GATGTACGGAGGTCTCGAGACGATGCA-A-TACGTACGGACGCATCATCAACATCACTGC 87
||||||||||| ||| | |||| ||| | | | || || || ||||| || ||||||
Sbjct 164 GATGTACGGAGCTCTAGTGACG--GCACAGTCCTTAAGGTTGCGTCATCTTCACCACTGC 221
Query 88 AGAGAAAACCAGTGTACCTCTGCTCTTGTCAAACACA-TCAAAGCTCCTGTTCATCTCGT 146
||||| |||||||||||||||| ||| |||||| ||| || |||||||||||||||| ||
Sbjct 222 AGAGAGAACCAGTGTACCTCTGTTCTCGTCAAATACATTC-AAGCTCCTGTTCATCTTGT 280
Query 147 TTGGTCACTTGTGCGGAGATTTGATCAGCCGCAGAAATACAAACCATTTGTGAGTAGATG 206
||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 281 TTGGTCACTGGTGCGGAGATTTGATCAGCCGCAGAAATACAAACCATTTATAAGCAGATG 340
Query 207 CAGAGTAA-TCGGTGATCCTGAAATCGGGAGTCTTAGAGAAGTCAATGTTAAATCTGGTC 265
|| |||| | ||||||||||| ||||| |||| |||||||| ||||| ||||||||||
Sbjct 341 CACTGTAAAT-GGTGATCCTGAGATCGGTTGTCTCAGAGAAGTAAATGTCAAATCTGGTC 399
Query 266 TTCCTGCAACAACAAGTACTGAGAGATTAGAACTTCTTGATGATGAAGAACATATCCTCG 325
|||| ||||| || ||||| |||||||| |||| ||||||||||||||||| |||||||
Sbjct 400 TTCCAGCAACCACCAGTACAGAGAGATTGGAACAGCTTGATGATGAAGAACACATCCTCG 459
Query 326 GTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGAT-TGTGACTGTG 384
||||||| ||||| ||||||||||| ||||||||||||||||| ||||| | ||||||||
Sbjct 460 GTATCAACATCATTGGTGGTGATCATAGACTTAAGAATTACTCTTCGATCT-TGACTGTG 518
Query 385 CATCCGGAGATAATCGAGGGAAGAG-CTGGAACAATGGTGATTGAATCGTTTGTAGTTGA 443
||||||||||| || || ||||| | | ||||| |||||||| || || ||||| || ||
Sbjct 519 CATCCGGAGATGATTGATGGAAG-GTCAGGAACTATGGTGATGGAGTCTTTTGTTGTGGA 577
Query 444 TGTTCCTGAAGGTAACAC-AAAGGAAGAGACTTGCTACTTTGTTGAAGT-ACTTATCA-G 500
||||||| |||| ||||| |||| | || || || ||||| || ||| | ||| || | |
Sbjct 578 TGTTCCTCAAGGCAACACCAAAG-ATGATACATGTTACTTCGTGGAA-TCACTCATAAAG 635
Query 501 ATGTAATCTCAAGTCATTAGCA-GATGTTTCTGAAAGATTGGCTTCTCAGGACATAACTC 559
||||| ||||| || || || | ||| ||||||||||||||| |||| ||||| || |
Sbjct 636 -TGTAACCTCAAATCCTTGGCTTG-TGTCTCTGAAAGATTGGCTGCTCAAGACATTAC-C 692
Query 560 AATTC 564
|||||
Sbjct 693 AATTC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5