BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909860
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01180.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1365 0.0
> AT1G01180.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:75583-76758 FORWARD
LENGTH=1176
Length=1176
Score = 1365 bits (739), Expect = 0.0
Identities = 864/924 (94%), Gaps = 9/924 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGAGGATTGTCGTCTTCCTCACAAACGCGATGCCTTCCAATTCTTGAAAACCAAG 60
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 51 ATGAAGGAGGATCGTCGTCTTCCTCACAAACGCGACGCCTTCCAATTCTTGAAAACCAAG 110
Query 61 ACTGCTTACGTTATCTTCATAGTTCTAACCTACGCCTTCGGTTACTTCTCCGCCTTCTAC 120
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 111 GCTGCGTACGTTATCGTCATAGTTCTAACCTACGCCTTTGGTTACTTCTCCGCCTACCAC 170
Query 121 TCTCGTCAACCGCTGCAGCAGCAGCAGCCACCGTCTCCGGCGGCGGTGAGAGATGTGAAG 180
| || |||||||||||||||||||| |||||||||| || | || | || |||
Sbjct 171 TATCATCAACCGCTGCAGCAGCAGCTGCCACCGTCTACGACAGC------CG-TG-GAA- 221
Query 181 ACGATAAAACCTCAAGTTTGTTCAATCGACAACTTCCGAGTAACGACTCGATGCGGCAAT 240
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 222 ACGACAAAACCTCAAGTTTGTTCAATCGACAACTTCCGAGTTACGACTCCATGCGGCAAT 281
Query 241 CTTGTCCCGCCGGAATTGATTCGCCAAACGGTTATCGACCGGATCTATAACGGAACTTCT 300
||||| |||||||||||||||||||| || ||||| |||||||||| |||||||||||||
Sbjct 282 CTTGTTCCGCCGGAATTGATTCGCCAGACTGTTATTGACCGGATCTTTAACGGAACTTCT 341
Query 301 CCGTACACCGATTTCCCACCACCACACGCCGAGAAGTTTCTCCGGCCAAAAAGAATCAAA 360
||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 342 CCGTACATCGATTTCCCACCACCGCACGCCAAGAAGTTTCTCCGGCCAAAAAGAATCAAA 401
Query 361 GGCTGGGGATCGTACGGAGCCGTTTTCGAGAATCTAATCCGCCGAGTCAAACCTAAGACG 420
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GGTTGGGGATCATACGGGGCCGTTTTCGAGAATCTAATCCGCCGAGTCAAACCTAAGACG 461
Query 421 ATCGTCGAAATCGGGAGTTTCCTCGGCGCGTCGGCGATACACATGGCGAATCTCACGCGC 480
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 462 ATCGTCGAAGTCGGGAGTTTTCTCGGCGCGTCGGCGATACACATGGCGAATCTCACGCGC 521
Query 481 CGCCTTGGGCTAGAGGATACTCAGATTCTCTGCGTCGACGATTTCCGTGGCTGGCCTGGT 540
|| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 522 CGACTTGGGCTCGAGGAGACTCAGATTCTATGCGTCGACGACTTCCGTGGCTGGCCCGGT 581
Query 541 TTTCGAGACCGGTTTAAGGACATGGCTTTGGTTAACGGTGACGTTTTGCTTATGTACCAG 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 582 TTTCGAGACCGGTTTAAGGACATGGCTTTGGTTAACGGTGACGTTCTGCTTATGTACCAG 641
Query 601 TTTATGCAAAACGTGGTTAGCTCGAATTTTTCCGGTTCGATTTTGCCGGTTCCTTTCTCG 660
||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 642 TTTATGCAAAACGTGGTTATCTCGGATTTTTCCGGTTCGATATTGCCGGTTCCTTTCTCG 701
Query 661 ACCGGTTCCGCTTTGGAGAAGCTGTGTGAGTGGGGAGTGAAGGCGGATCTGGTGGAGATA 720
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 702 ACCGGTTCGGCTTTGGAGAAGCTGTGTGAGTGGGGAGTGACGGCGGACCTGGTGGAGATA 761
Query 721 GACGCGGGTCACGATTTCAATTCGGCTTGGGCGGATATAAACCGGGCGGTTAGGATACTC 780
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 762 GACGCGGGTCACGATTTTAATTCGGCATGGGCGGATATAAACCGGGCGGTTCGGATACTC 821
Query 781 CGACCCGGCGGAGTTATATTCGGTCACGATTATTTCACGGCGGCGGATAATAGAGGAGTG 840
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 822 CGACCCGGCGGTGTTATATTTGGTCACGATTATTTCACGGCGGCGGATAATAGAGGAGTG 881
Query 841 AGGAGAGCCGTGAATCTGTTCGCAGAGATTAACCGGTTAAAAGTCAAAACCGATGGTCAA 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 882 AGGAGAGCCGTGAATCTGTTCGCAGAGATTAACCGGTTAAAGGTCAAAACCGATGGTCAA 941
Query 901 CATTGGGTTATTGATTCCGTCAAA 924
||||||||||||||||| ||||||
Sbjct 942 CATTGGGTTATTGATTCGGTCAAA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5