BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg909865

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35560.2 | Symbols:  | Transducin/WD40 repeat-like superfami...   187    3e-47


> AT4G35560.2 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:16881362-16887083 FORWARD LENGTH=3558
Length=3558

 Score =  187 bits (101),  Expect = 3e-47
 Identities = 127/139 (91%), Gaps = 3/139 (2%)
 Strand=Plus/Plus

Query  18    TGAAGAAGAGCTAGACATAGATGACATTGACATCGACGATCATCATCATAGT---CAACA  74
             |||||||||| | |||||||||||||||||||| ||||||||||||| || |   |||||
Sbjct  2918  TGAAGAAGAGTTGGACATAGATGACATTGACATTGACGATCATCATCCTAATCAACAACA  2977

Query  75    ACAAGAGAAGCCTAAAGAACAAGGGATATTGTCACGGCTTAGTAAGCAGAAGATGGTGAA  134
             |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct  2978  ACAAGAGAAGCCTAAAGAACAAGGGATATTGTCAGGGCTTAGTAAACAGAAGATGGCGAA  3037

Query  135   TAGGTTTAGCAATTTCAAA  153
             ||||||||| |||||||||
Sbjct  3038  TAGGTTTAGTAATTTCAAA  3056



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8802736425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5